Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00293 * 2 1 4 4 H 1.48494 * 109.47468 * 239.99770 * 3 2 1 5 5 H 1.48506 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47328 * 119.99789 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99430 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47079 * 179.97438 * 11 10 9 13 13 C 1.42899 * 113.99778 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46889 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.48976 * 54.30315 * 14 13 12 16 16 C 1.54085 * 110.54250 * 176.98623 * 14 13 12 17 17 O 1.45742 * 103.89881 * 118.59901 * 16 14 13 18 18 C 1.33713 * 109.18240 * 0.02562 * 17 16 14 19 19 O 1.21428 * 123.07947 * 179.97438 * 18 17 16 20 20 O 1.34025 * 113.88965 * 0.08086 * 18 17 16 21 21 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47258 * 59.99888 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00048 * 9 7 2 24 24 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 25 25 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 26 26 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 27 27 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 28 28 H 1.08997 * 109.47442 * 300.00036 * 13 12 11 29 29 H 1.08997 * 109.47171 * 60.00232 * 13 12 11 30 30 H 1.08997 * 110.54488 * 237.20597 * 16 14 13 31 31 H 1.09005 * 110.54012 * 359.85465 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4088 -6.0733 -0.0005 13 6 1.7941 -7.3634 -0.0005 14 6 2.8771 -8.4442 -0.0006 15 1 3.5680 -8.2921 0.8287 16 6 2.2419 -9.8460 0.0752 17 8 2.6680 -10.4907 -1.1604 18 6 3.4245 -9.6399 -1.8617 19 8 3.9145 -9.9201 -2.9368 20 8 3.5949 -8.4499 -1.2690 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5568 -0.8902 23 1 0.6246 -2.5572 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8531 -5.0451 -0.8897 27 1 0.8538 -5.0446 0.8903 28 1 1.1743 -7.4707 0.8896 29 1 1.1737 -7.4702 -0.8903 30 1 2.6194 -10.3907 0.9407 31 1 1.1552 -9.7718 0.1155 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -190.091332 kcal Electronic energy + Delta-G solvation = -15497.601181 eV Core-core repulsion = 12551.092666 eV Total energy + Delta-G solvation = -2946.508515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.37821 -38.30813 -37.62757 -36.94291 -34.02713 -32.29669 -31.19975 -27.31447 -25.97104 -23.43918 -23.07895 -22.88611 -20.27223 -18.40988 -17.97376 -17.49571 -16.72143 -16.29897 -16.03154 -15.46735 -14.76660 -14.63209 -14.46069 -14.11705 -13.39696 -13.07933 -12.75608 -12.15065 -11.78225 -11.64474 -11.44861 -11.39105 -10.99811 -10.89235 -10.60437 -10.51035 -9.95575 -9.49748 -9.44793 -9.16342 -8.38376 -6.03975 -4.06389 2.02651 2.27528 2.71440 3.08657 3.32758 3.36712 3.39898 3.75924 4.10059 4.28751 4.45548 4.56437 4.65140 4.81423 5.00131 5.22625 5.32224 5.59874 5.67214 6.07214 6.58278 6.60200 6.82509 7.02158 7.11847 7.29887 7.60655 7.72607 7.94999 8.37536 8.99896 9.57958 11.07547 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062152 B = 0.003764 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.400374 B = 7437.755316 C = 7660.733220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.062 3.938 12 O -0.382 6.382 13 C 0.052 3.948 14 C 0.049 3.951 15 H 0.136 0.864 16 C 0.026 3.974 17 O -0.326 6.326 18 C 0.589 3.411 19 O -0.453 6.453 20 O -0.305 6.305 21 H 0.262 0.738 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -19.035 3.840 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.013 4.013 12 O -0.301 6.301 13 C -0.026 4.026 14 C -0.007 4.007 15 H 0.154 0.846 16 C -0.048 4.048 17 O -0.245 6.245 18 C 0.396 3.604 19 O -0.346 6.346 20 O -0.224 6.224 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.849 -19.027 3.236 19.389 hybrid contribution 0.008 0.953 0.172 0.969 sum 1.857 -18.074 3.408 18.486 Atomic orbital electron populations 1.69952 1.06091 1.26823 1.50736 1.25023 0.94877 0.99341 0.95195 0.86611 0.79548 0.82873 0.78712 1.20153 1.21270 1.20190 1.21178 0.93137 0.90826 1.50831 0.92525 1.19046 0.93881 0.91043 0.97357 1.21675 0.99741 0.91450 1.01754 1.22890 0.92070 0.86607 0.99769 1.87963 1.34124 1.12597 1.95431 1.22707 0.93153 0.84634 1.02069 1.24545 0.95484 0.95027 0.85623 0.84638 1.24877 1.03134 0.90806 0.86027 1.87398 1.63647 1.40421 1.33055 1.21528 0.76659 0.78003 0.84206 1.91172 1.49948 1.76714 1.16725 1.87689 1.67418 1.33123 1.34139 0.92891 0.96431 0.96468 0.92455 0.92358 0.93461 0.93428 0.90454 0.92085 0.85873 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.25 5.52 -26.73 -0.15 -2.40 16 11 C 0.06 1.03 5.94 37.16 0.22 1.25 16 12 O -0.38 -5.74 10.34 -35.29 -0.36 -6.10 16 13 C 0.05 0.50 5.49 37.16 0.20 0.70 16 14 C 0.05 0.39 4.14 -26.17 -0.11 0.28 16 15 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 16 C 0.03 0.13 7.88 37.72 0.30 0.43 16 17 O -0.33 -3.20 11.11 -45.93 -0.51 -3.71 16 18 C 0.59 7.72 9.39 101.05 0.95 8.67 16 19 O -0.45 -7.65 18.04 -27.29 -0.49 -8.14 16 20 O -0.31 -3.90 10.84 -47.13 -0.51 -4.41 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.12 0.30 7.73 -51.93 -0.40 -0.10 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -34.37 277.58 -5.28 -39.65 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: -4.17 Total: -7.96 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.87 Total: -4.13 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.88 Total: -22.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.37 -5.28 -39.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.438 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds