Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00293 * 2 1 4 4 H 1.48494 * 109.47468 * 239.99770 * 3 2 1 5 5 H 1.48506 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47328 * 119.99789 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99430 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47079 * 179.97438 * 11 10 9 13 13 C 1.42899 * 113.99778 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46889 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.48976 * 54.30315 * 14 13 12 16 16 C 1.54085 * 110.54250 * 176.98623 * 14 13 12 17 17 O 1.45742 * 103.89881 * 118.59901 * 16 14 13 18 18 C 1.33713 * 109.18240 * 0.02562 * 17 16 14 19 19 O 1.21428 * 123.07947 * 179.97438 * 18 17 16 20 20 O 1.34025 * 113.88965 * 0.08086 * 18 17 16 21 21 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47258 * 59.99888 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00048 * 9 7 2 24 24 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 25 25 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 26 26 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 27 27 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 28 28 H 1.08997 * 109.47442 * 300.00036 * 13 12 11 29 29 H 1.08997 * 109.47171 * 60.00232 * 13 12 11 30 30 H 1.08997 * 110.54488 * 237.20597 * 16 14 13 31 31 H 1.09005 * 110.54012 * 359.85465 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4088 -6.0733 -0.0005 13 6 1.7941 -7.3634 -0.0005 14 6 2.8771 -8.4442 -0.0006 15 1 3.5680 -8.2921 0.8287 16 6 2.2419 -9.8460 0.0752 17 8 2.6680 -10.4907 -1.1604 18 6 3.4245 -9.6399 -1.8617 19 8 3.9145 -9.9201 -2.9368 20 8 3.5949 -8.4499 -1.2690 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5568 -0.8902 23 1 0.6246 -2.5572 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8531 -5.0451 -0.8897 27 1 0.8538 -5.0446 0.8903 28 1 1.1743 -7.4707 0.8896 29 1 1.1737 -7.4702 -0.8903 30 1 2.6194 -10.3907 0.9407 31 1 1.1552 -9.7718 0.1155 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -213.634492 kcal Electronic energy + Delta-G solvation = -15498.622089 eV Core-core repulsion = 12551.092666 eV Total energy + Delta-G solvation = -2947.529423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.18633 -39.36320 -38.70020 -37.80181 -35.90523 -33.77651 -32.44751 -28.80295 -27.02800 -24.77429 -24.27859 -23.77043 -22.02168 -19.19418 -18.75847 -18.58269 -18.31629 -17.47093 -17.24288 -16.54702 -16.44271 -15.80157 -15.29160 -15.07429 -14.62713 -14.43672 -14.02511 -13.40300 -13.36050 -13.19694 -12.70101 -12.52598 -12.49573 -12.30559 -12.03800 -11.70971 -11.63269 -11.44016 -11.20681 -10.62397 -10.55490 -8.21705 -6.32364 1.06529 1.40993 1.43701 1.49050 1.51710 2.06922 2.31969 2.43669 3.11985 3.13229 3.46574 3.56564 3.99568 4.16769 4.22707 4.28824 4.39922 4.45658 4.60565 4.61923 4.92523 4.93328 5.16663 5.49138 5.70219 5.82619 6.01333 6.13518 6.16926 6.27534 6.83241 7.36855 8.89989 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062152 B = 0.003764 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.400374 B = 7437.755316 C = 7660.733220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.100 4.100 11 C 0.075 3.925 12 O -0.404 6.404 13 C 0.041 3.959 14 C 0.044 3.956 15 H 0.157 0.843 16 C 0.031 3.969 17 O -0.329 6.329 18 C 0.597 3.403 19 O -0.506 6.506 20 O -0.332 6.332 21 H 0.265 0.735 22 H -0.005 1.005 23 H 0.002 0.998 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -19.736 5.361 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.138 4.138 11 C -0.001 4.001 12 O -0.324 6.324 13 C -0.036 4.036 14 C -0.010 4.010 15 H 0.175 0.825 16 C -0.042 4.042 17 O -0.248 6.248 18 C 0.405 3.595 19 O -0.403 6.403 20 O -0.251 6.251 21 H 0.074 0.926 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.183 0.817 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.838 -19.747 4.793 20.403 hybrid contribution -0.055 1.129 -0.209 1.149 sum 1.783 -18.618 4.585 19.257 Atomic orbital electron populations 1.70068 1.07670 1.27949 1.51438 1.25941 0.95801 1.03245 0.94580 0.85510 0.78316 0.78131 0.79163 1.19463 1.20621 1.19073 1.21646 0.93559 0.92431 1.50970 0.92411 1.18925 0.94237 0.92379 0.95458 1.21414 0.98689 0.92497 1.01184 1.22513 0.91439 0.85513 1.00632 1.87888 1.34630 1.14233 1.95691 1.23126 0.94105 0.82351 1.03996 1.24921 0.95575 0.96275 0.84278 0.82513 1.25384 1.04941 0.88699 0.85180 1.87383 1.62677 1.40101 1.34617 1.21505 0.76131 0.78111 0.83734 1.91115 1.52192 1.77832 1.19115 1.87671 1.68148 1.33128 1.36153 0.92640 0.98626 0.97924 0.92379 0.93489 0.93510 0.91684 0.86386 0.92180 0.81690 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.10 -4.16 5.52 30.59 0.17 -3.99 16 11 C 0.07 2.40 5.94 71.98 0.43 2.82 16 12 O -0.40 -11.43 10.34 -148.93 -1.54 -12.97 16 13 C 0.04 0.66 5.49 71.98 0.39 1.05 16 14 C 0.04 0.57 4.14 30.96 0.13 0.70 16 15 H 0.16 1.35 8.14 -2.39 -0.02 1.34 16 16 C 0.03 0.17 7.88 72.35 0.57 0.74 16 17 O -0.33 -5.77 11.11 -38.90 -0.43 -6.20 16 18 C 0.60 15.44 9.39 113.37 1.06 16.50 16 19 O -0.51 -17.65 18.04 27.79 0.50 -17.15 16 20 O -0.33 -8.20 10.84 -41.42 -0.45 -8.65 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 23 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.17 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.15 -0.02 7.73 -2.38 -0.02 -0.03 16 Total: -1.00 -76.99 277.58 5.10 -71.89 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 1.12 Total: -6.31 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 3.60 Total: -11.09 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.92 Total: -44.97 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -76.99 5.10 -71.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.747 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds