Wall clock time and date at job start Sun Mar 29 2020 22:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 119.99967 * 2 1 4 4 H 1.48506 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47211 * 299.99858 * 3 2 1 6 6 H 1.48506 * 109.47412 * 59.99844 * 3 2 1 7 7 C 1.37876 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47007 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46860 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47176 * 180.02562 * 11 10 9 13 13 C 1.42902 * 114.00205 * 180.02562 * 12 11 10 14 14 C 1.52575 * 109.22653 * 88.76392 * 13 12 11 15 15 C 1.53102 * 109.95374 * 190.99830 * 14 13 12 16 16 S 1.81739 * 108.84117 * 296.97150 * 15 14 13 17 17 C 1.81751 * 102.22279 * 53.26834 * 16 15 14 18 18 C 1.52586 * 109.22674 * 209.99901 * 13 12 11 19 19 H 0.97002 * 120.00279 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46997 * 59.99558 * 9 7 2 21 21 H 1.08995 * 109.46738 * 299.99942 * 9 7 2 22 22 H 1.09001 * 109.47063 * 60.00260 * 10 9 7 23 23 H 1.08996 * 109.47362 * 299.99760 * 10 9 7 24 24 H 1.09004 * 109.47280 * 60.00115 * 11 10 9 25 25 H 1.09003 * 109.47503 * 300.00280 * 11 10 9 26 26 H 1.09004 * 109.18582 * 329.37932 * 13 12 11 27 27 H 1.09000 * 109.39151 * 311.14186 * 14 13 12 28 28 H 1.09004 * 109.39609 * 70.84822 * 14 13 12 29 29 H 1.09003 * 109.57550 * 177.16316 * 15 14 13 30 30 H 1.08997 * 109.57619 * 56.78199 * 15 14 13 31 31 H 1.08999 * 109.57590 * 186.93240 * 17 16 15 32 32 H 1.08992 * 109.57373 * 66.53609 * 17 16 15 33 33 H 1.09003 * 109.38723 * 289.15193 * 18 13 12 34 34 H 1.09001 * 109.38828 * 48.85052 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4088 -6.0732 0.0018 13 6 1.7942 -7.3634 0.0018 14 6 1.5506 -7.8039 -1.4385 15 6 0.6547 -9.0452 -1.4608 16 16 1.5192 -10.4082 -0.6255 17 6 1.9547 -9.6644 0.9747 18 6 2.7043 -8.3534 0.7228 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8906 23 1 2.8719 -3.6044 -0.8894 24 1 0.8532 -5.0451 -0.8886 25 1 0.8538 -5.0446 0.8914 26 1 0.8401 -7.3056 0.5258 27 1 1.0644 -6.9968 -1.9865 28 1 2.5044 -8.0375 -1.9118 29 1 0.4435 -9.3247 -2.4930 30 1 -0.2787 -8.8312 -0.9402 31 1 2.5931 -10.3484 1.5337 32 1 1.0467 -9.4625 1.5427 33 1 3.5827 -8.5510 0.1083 34 1 3.0193 -7.9278 1.6755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205665268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:23 Heat of formation + Delta-G solvation = -79.050529 kcal Electronic energy + Delta-G solvation = -13904.748025 eV Core-core repulsion = 11541.640566 eV Total energy + Delta-G solvation = -2363.107459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.73895 -35.34390 -33.62050 -31.78101 -31.42432 -27.26018 -25.83600 -23.41659 -22.79452 -21.00661 -20.09252 -17.14258 -16.82583 -16.14663 -15.47405 -14.78716 -14.49987 -14.44669 -13.95981 -13.53637 -13.10742 -13.01477 -12.81529 -12.23412 -12.12028 -11.60121 -11.54810 -11.06190 -10.87185 -10.74729 -10.53949 -10.37657 -9.97053 -9.86250 -9.46709 -9.23463 -9.11459 -8.38126 -7.92598 -6.03116 -4.05378 1.53183 2.28379 3.30131 3.37502 3.42231 3.71713 4.44545 4.52293 4.61459 4.74047 4.83384 4.97542 5.10809 5.22924 5.33116 5.35600 5.45080 5.63810 5.67099 5.75665 5.79622 6.01627 6.03183 6.16095 6.64669 6.68417 7.05816 7.50439 7.63478 7.75166 7.96330 8.39191 9.01505 9.58980 11.08490 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.074928 B = 0.003954 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.603771 B = 7079.336774 C = 7227.833601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.381 6.381 13 C 0.083 3.917 14 C -0.146 4.146 15 C -0.076 4.076 16 S -0.275 6.275 17 C -0.076 4.076 18 C -0.120 4.120 19 H 0.260 0.740 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -18.636 -0.064 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.014 4.014 12 O -0.300 6.300 13 C 0.025 3.975 14 C -0.185 4.185 15 C -0.224 4.224 16 S -0.050 6.050 17 C -0.224 4.224 18 C -0.159 4.159 19 H 0.070 0.930 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.870 -19.531 -0.435 19.625 hybrid contribution -0.251 2.116 0.400 2.168 sum 1.619 -17.415 -0.035 17.490 Atomic orbital electron populations 1.69972 1.06090 1.26566 1.50960 1.25027 0.94870 0.99346 0.95261 0.86509 0.80158 0.83609 0.77588 1.19659 1.20976 1.20984 1.21258 0.93185 0.90828 1.50482 0.92451 1.19056 0.93920 0.91126 0.97315 1.21653 0.99652 0.91659 1.01546 1.22861 0.92196 0.86992 0.99384 1.87952 1.34231 1.12863 1.94952 1.21926 0.96065 0.85000 0.94530 1.22259 1.00898 0.96838 0.98521 1.23427 1.00152 0.95284 1.03572 1.86844 1.75318 1.24139 1.18664 1.23425 1.03610 0.99493 0.95867 1.21767 0.99038 0.92843 1.02261 0.93021 0.96502 0.96497 0.92568 0.92545 0.93837 0.93834 0.92527 0.90075 0.89849 0.87497 0.89750 0.87315 0.89698 0.89865 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.29 5.52 -26.73 -0.15 -2.44 16 11 C 0.06 1.09 5.71 37.16 0.21 1.31 16 12 O -0.38 -6.25 9.96 -35.23 -0.35 -6.60 16 13 C 0.08 1.05 2.35 -27.16 -0.06 0.99 16 14 C -0.15 -1.65 5.35 -26.90 -0.14 -1.80 16 15 C -0.08 -0.73 6.45 37.21 0.24 -0.49 16 16 S -0.28 -2.88 22.33 -107.50 -2.40 -5.28 16 17 C -0.08 -0.68 6.46 37.21 0.24 -0.44 16 18 C -0.12 -1.28 5.39 -26.89 -0.14 -1.43 16 19 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 20 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 25 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 27 H 0.08 0.96 7.56 -51.93 -0.39 0.56 16 28 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -30.18 289.59 -8.82 -39.00 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -5.79 Total: -4.48 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.36 Total: -17.49 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.35 Total: -6.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.40 Total: -5.28 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.18 -8.82 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.054 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds