Wall clock time and date at job start Sun Mar 29 2020 22:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 119.99967 * 2 1 4 4 H 1.48506 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47211 * 299.99858 * 3 2 1 6 6 H 1.48506 * 109.47412 * 59.99844 * 3 2 1 7 7 C 1.37876 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47007 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46860 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47176 * 180.02562 * 11 10 9 13 13 C 1.42902 * 114.00205 * 180.02562 * 12 11 10 14 14 C 1.52575 * 109.22653 * 88.76392 * 13 12 11 15 15 C 1.53102 * 109.95374 * 190.99830 * 14 13 12 16 16 S 1.81739 * 108.84117 * 296.97150 * 15 14 13 17 17 C 1.81751 * 102.22279 * 53.26834 * 16 15 14 18 18 C 1.52586 * 109.22674 * 209.99901 * 13 12 11 19 19 H 0.97002 * 120.00279 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46997 * 59.99558 * 9 7 2 21 21 H 1.08995 * 109.46738 * 299.99942 * 9 7 2 22 22 H 1.09001 * 109.47063 * 60.00260 * 10 9 7 23 23 H 1.08996 * 109.47362 * 299.99760 * 10 9 7 24 24 H 1.09004 * 109.47280 * 60.00115 * 11 10 9 25 25 H 1.09003 * 109.47503 * 300.00280 * 11 10 9 26 26 H 1.09004 * 109.18582 * 329.37932 * 13 12 11 27 27 H 1.09000 * 109.39151 * 311.14186 * 14 13 12 28 28 H 1.09004 * 109.39609 * 70.84822 * 14 13 12 29 29 H 1.09003 * 109.57550 * 177.16316 * 15 14 13 30 30 H 1.08997 * 109.57619 * 56.78199 * 15 14 13 31 31 H 1.08999 * 109.57590 * 186.93240 * 17 16 15 32 32 H 1.08992 * 109.57373 * 66.53609 * 17 16 15 33 33 H 1.09003 * 109.38723 * 289.15193 * 18 13 12 34 34 H 1.09001 * 109.38828 * 48.85052 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4088 -6.0732 0.0018 13 6 1.7942 -7.3634 0.0018 14 6 1.5506 -7.8039 -1.4385 15 6 0.6547 -9.0452 -1.4608 16 16 1.5192 -10.4082 -0.6255 17 6 1.9547 -9.6644 0.9747 18 6 2.7043 -8.3534 0.7228 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8906 23 1 2.8719 -3.6044 -0.8894 24 1 0.8532 -5.0451 -0.8886 25 1 0.8538 -5.0446 0.8914 26 1 0.8401 -7.3056 0.5258 27 1 1.0644 -6.9968 -1.9865 28 1 2.5044 -8.0375 -1.9118 29 1 0.4435 -9.3247 -2.4930 30 1 -0.2787 -8.8312 -0.9402 31 1 2.5931 -10.3484 1.5337 32 1 1.0467 -9.4625 1.5427 33 1 3.5827 -8.5510 0.1083 34 1 3.0193 -7.9278 1.6755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205665268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:23 Heat of formation + Delta-G solvation = -95.833756 kcal Electronic energy + Delta-G solvation = -13905.475800 eV Core-core repulsion = 11541.640566 eV Total energy + Delta-G solvation = -2363.835234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88404 -36.65338 -35.43426 -33.34345 -32.58389 -28.89958 -27.07789 -24.85136 -24.04374 -22.26850 -21.59254 -18.62520 -17.98421 -17.71641 -16.79502 -16.47685 -15.83642 -15.54773 -14.86491 -14.72969 -14.40016 -14.18176 -13.85063 -13.78240 -13.48718 -13.30162 -12.84910 -12.51792 -12.48277 -12.17491 -12.02733 -11.68549 -11.56266 -11.44321 -11.20065 -10.73981 -10.58080 -10.47899 -8.73720 -8.22679 -6.33648 0.77070 1.40266 1.40480 1.52181 1.54210 2.38481 2.58467 3.10993 3.63601 3.75969 3.92426 3.93254 4.14168 4.18199 4.22091 4.27090 4.38545 4.56060 4.59274 4.71779 4.83539 4.87580 4.91815 4.93634 5.11102 5.13119 5.16832 5.48127 5.67861 5.81043 6.16751 6.29960 6.82247 7.35824 8.89553 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.074928 B = 0.003954 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.603771 B = 7079.336774 C = 7227.833601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.097 4.097 11 C 0.074 3.926 12 O -0.395 6.395 13 C 0.076 3.924 14 C -0.142 4.142 15 C -0.068 4.068 16 S -0.300 6.300 17 C -0.066 4.066 18 C -0.116 4.116 19 H 0.265 0.735 20 H -0.003 1.003 21 H -0.003 1.003 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -19.067 0.158 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.002 4.002 12 O -0.315 6.315 13 C 0.018 3.982 14 C -0.181 4.181 15 C -0.216 4.216 16 S -0.074 6.074 17 C -0.214 4.214 18 C -0.155 4.155 19 H 0.074 0.926 20 H 0.015 0.985 21 H 0.016 0.984 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.417 -19.985 -0.213 20.132 hybrid contribution -0.429 2.197 0.333 2.263 sum 1.989 -17.788 0.120 17.900 Atomic orbital electron populations 1.70087 1.07739 1.27841 1.51562 1.25965 0.95805 1.03343 0.94570 0.85378 0.79016 0.78633 0.77901 1.18727 1.20216 1.20208 1.21685 0.93576 0.92288 1.50773 0.92290 1.18933 0.94241 0.92522 0.95323 1.21394 0.98607 0.92183 1.01258 1.22524 0.91690 0.86071 0.99944 1.87905 1.34453 1.13953 1.95151 1.22213 0.96716 0.83551 0.95736 1.22196 1.01010 0.97445 0.97499 1.23406 0.99818 0.93967 1.04442 1.86965 1.75600 1.24936 1.19933 1.23441 1.04163 0.98661 0.95126 1.21732 0.98657 0.93102 1.01974 0.92645 0.98459 0.98437 0.92754 0.92817 0.93299 0.93298 0.91884 0.90668 0.90393 0.86296 0.88911 0.85564 0.88704 0.90341 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.10 -4.14 5.52 30.59 0.17 -3.97 16 11 C 0.07 2.59 5.71 71.98 0.41 3.00 16 12 O -0.39 -12.58 9.96 -148.98 -1.48 -14.06 16 13 C 0.08 1.80 2.35 30.32 0.07 1.87 16 14 C -0.14 -3.05 5.35 30.49 0.16 -2.88 16 15 C -0.07 -1.20 6.45 72.02 0.46 -0.73 16 16 S -0.30 -5.74 22.33 -56.49 -1.26 -7.00 16 17 C -0.07 -1.04 6.46 72.01 0.46 -0.58 16 18 C -0.12 -2.27 5.39 30.49 0.16 -2.11 16 19 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 20 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 21 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 22 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 24 H 0.05 1.65 7.60 -2.39 -0.02 1.63 16 25 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 26 H 0.06 1.43 7.71 -2.38 -0.02 1.41 16 27 H 0.07 1.70 7.56 -2.39 -0.02 1.68 16 28 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -63.64 289.59 3.36 -60.28 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.04 Total: 5.10 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 2.75 Total: -34.46 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.48 Total: -14.06 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.26 Total: -7.00 kcal Total: -63.64 3.36 -60.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.555 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds