Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00116 * 2 1 4 4 O 1.42899 * 109.47525 * 74.99524 * 3 2 1 5 5 C 1.42905 * 113.99778 * 74.99915 * 4 3 2 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47501 * 180.02562 * 7 6 5 9 9 C 1.47480 * 111.00100 * 74.02639 * 8 7 6 10 10 C 1.53505 * 87.93292 * 138.70452 * 9 8 7 11 11 C 1.50697 * 114.17373 * 220.32899 * 10 9 8 12 12 H 1.07993 * 120.00172 * 93.84079 * 11 10 9 13 13 C 1.37879 * 119.99969 * 273.84331 * 11 10 9 14 14 N 1.31515 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00038 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47188 * 89.99938 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99959 * 15 13 11 18 18 H 1.48498 * 109.46914 * 330.00167 * 15 13 11 19 19 C 1.47475 * 111.00337 * 170.00027 * 8 7 6 20 20 H 1.09007 * 109.47448 * 300.00661 * 1 2 3 21 21 H 1.08996 * 109.47451 * 60.00232 * 1 2 3 22 22 H 1.09008 * 109.47468 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46741 * 314.99830 * 3 2 1 24 24 H 1.08997 * 109.46994 * 194.99484 * 3 2 1 25 25 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 26 26 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 6 5 4 28 28 H 1.09001 * 109.47362 * 60.00784 * 6 5 4 29 29 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 30 30 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 31 31 H 1.09002 * 113.47546 * 253.47193 * 9 8 7 32 32 H 1.09002 * 113.47901 * 23.93514 * 9 8 7 33 33 H 1.09007 * 114.34159 * 87.63651 * 10 9 8 34 34 H 0.97005 * 119.99497 * 180.02562 * 14 13 11 35 35 H 1.09001 * 113.47674 * 336.06132 * 19 8 7 36 36 H 1.08997 * 113.48057 * 106.52901 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8853 1.8825 1.3013 5 6 2.7911 1.3426 2.2659 6 6 2.5697 2.0307 3.6143 7 6 3.5398 1.4532 4.6470 8 7 3.3270 2.1134 5.9418 9 6 2.0831 1.6408 6.5779 10 6 2.8406 1.6167 7.9128 11 6 2.5213 0.4279 8.7822 12 1 3.1392 -0.4566 8.7356 13 6 1.4403 0.4694 9.6370 14 7 0.6881 1.5467 9.6940 15 14 1.0440 -1.0045 10.7141 16 1 1.7580 -0.8768 12.0100 17 1 -0.4197 -1.0597 10.9586 18 1 1.4789 -2.2487 10.0299 19 6 4.0704 1.4260 7.0141 20 1 -0.3634 0.5140 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.4941 1.9328 -0.7267 24 1 3.0648 1.2335 -0.2659 25 1 2.6148 0.2721 2.3705 26 1 3.8161 1.5116 1.9360 27 1 2.7463 3.1012 3.5094 28 1 1.5446 1.8622 3.9444 29 1 3.3636 0.3827 4.7520 30 1 4.5648 1.6220 4.3168 31 1 1.2759 2.3727 6.5498 32 1 1.7698 0.6535 6.2385 33 1 2.8261 2.5624 8.4548 34 1 -0.0723 1.5760 10.2957 35 1 4.2875 0.3814 6.7912 36 1 4.9474 1.9758 7.3558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209023102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = -71.045677 kcal Electronic energy + Delta-G solvation = -15884.165657 eV Core-core repulsion = 13176.371105 eV Total energy + Delta-G solvation = -2707.794551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14330 -38.76458 -36.46450 -33.38620 -32.15243 -28.48899 -27.49124 -25.61066 -24.79173 -24.39445 -22.56260 -20.70412 -18.59961 -17.40970 -16.92781 -16.58094 -16.31093 -15.21257 -14.92868 -14.49172 -14.39362 -14.00989 -13.64445 -13.46307 -12.74828 -12.08706 -11.95168 -11.55639 -11.43074 -11.15896 -11.13708 -10.94360 -10.84798 -10.56373 -10.31160 -10.19444 -9.90238 -9.69274 -9.16804 -8.90044 -8.42453 -7.96697 -6.04013 -4.08499 3.29715 3.36618 3.39370 3.52666 3.64818 4.41293 4.83431 4.98722 5.04622 5.12979 5.21499 5.25260 5.29432 5.41547 5.48339 5.54886 5.56091 5.80347 5.99071 6.09300 6.29116 6.37254 6.46962 6.54293 6.66018 6.70093 6.79964 7.12873 7.17371 7.20573 7.74306 7.93180 8.11343 8.39228 8.94646 9.56398 11.05654 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.004689 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.554305 B = 5969.877699 C = 6468.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.406 6.406 3 C 0.213 3.787 4 O -0.400 6.400 5 C 0.066 3.934 6 C -0.111 4.111 7 C 0.026 3.974 8 N -0.485 5.485 9 C 0.005 3.995 10 C 0.040 3.960 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.891 3.109 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.006 4.006 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -1.076 -16.908 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.327 6.327 3 C 0.099 3.901 4 O -0.321 6.321 5 C -0.011 4.011 6 C -0.149 4.149 7 C -0.103 4.103 8 N -0.208 5.208 9 C -0.123 4.123 10 C 0.021 3.979 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.134 4.134 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.801 -0.308 -16.950 17.048 hybrid contribution -0.442 -1.670 0.424 1.778 sum 1.359 -1.977 -16.526 16.699 Atomic orbital electron populations 1.22761 0.80475 1.02708 1.00508 1.87992 1.20894 1.29768 1.94028 1.23900 0.98362 0.82643 0.85218 1.88008 1.61172 1.62156 1.20738 1.22549 0.91760 0.97789 0.88959 1.21415 1.00884 1.00960 0.91652 1.22462 0.98535 0.96615 0.92731 1.68867 1.07570 1.44953 0.99372 1.24015 0.92973 0.97472 0.97880 1.20107 0.88688 0.98313 0.90778 1.21044 1.12202 1.00040 1.22232 0.92459 1.25017 0.96164 0.95874 0.96533 1.69974 1.17226 1.27488 1.37669 0.86618 0.77495 0.83101 0.80928 1.20541 1.21188 1.19893 1.24005 0.99384 0.96199 0.93839 0.93061 0.94080 0.89790 0.89378 0.89357 0.92774 0.93352 0.90749 0.91121 0.94544 0.91752 0.91846 0.92939 0.91774 0.92870 0.92839 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.89 101.05 1.10 1.41 16 2 O -0.41 -4.83 10.76 -59.04 -0.64 -5.47 16 3 C 0.21 2.20 7.07 101.05 0.71 2.92 16 4 O -0.40 -5.39 10.40 -59.04 -0.61 -6.00 16 5 C 0.07 0.88 5.82 37.16 0.22 1.10 16 6 C -0.11 -1.74 5.69 -26.73 -0.15 -1.89 16 7 C 0.03 0.44 4.82 -3.82 -0.02 0.42 16 8 N -0.49 -10.06 6.41 -244.66 -1.57 -11.63 16 9 C 0.01 0.13 6.57 -7.55 -0.05 0.08 16 10 C 0.04 1.02 3.77 -91.25 -0.34 0.68 16 11 C -0.52 -14.23 8.82 -34.44 -0.30 -14.53 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 14 N -0.89 -25.78 13.26 55.43 0.74 -25.05 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.01 -0.12 7.27 -7.55 -0.05 -0.17 16 20 H 0.05 0.55 8.03 -51.93 -0.42 0.13 16 21 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 22 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 23 H 0.09 0.71 8.01 -51.93 -0.42 0.30 16 24 H 0.09 0.75 8.01 -51.93 -0.42 0.33 16 25 H 0.05 0.74 8.03 -51.93 -0.42 0.33 16 26 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.22 7.67 -51.93 -0.40 0.82 16 29 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.05 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.06 1.79 8.11 -51.93 -0.42 1.37 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.05 1.12 7.72 -51.93 -0.40 0.72 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -29.81 301.74 -7.73 -37.53 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.18 Total: -1.85 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 1.01 Total: -8.23 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.83 Total: -36.68 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.25 Total: -11.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.81 -7.73 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209023102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.512 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds