Wall clock time and date at job start Sun Mar 29 2020 21:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00116 * 2 1 4 4 O 1.42899 * 109.47525 * 74.99524 * 3 2 1 5 5 C 1.42905 * 113.99778 * 74.99915 * 4 3 2 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47501 * 180.02562 * 7 6 5 9 9 C 1.47480 * 111.00100 * 74.02639 * 8 7 6 10 10 C 1.53505 * 87.93292 * 138.70452 * 9 8 7 11 11 C 1.50697 * 114.17373 * 220.32899 * 10 9 8 12 12 H 1.07993 * 120.00172 * 93.84079 * 11 10 9 13 13 C 1.37879 * 119.99969 * 273.84331 * 11 10 9 14 14 N 1.31515 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00038 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47188 * 89.99938 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99959 * 15 13 11 18 18 H 1.48498 * 109.46914 * 330.00167 * 15 13 11 19 19 C 1.47475 * 111.00337 * 170.00027 * 8 7 6 20 20 H 1.09007 * 109.47448 * 300.00661 * 1 2 3 21 21 H 1.08996 * 109.47451 * 60.00232 * 1 2 3 22 22 H 1.09008 * 109.47468 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46741 * 314.99830 * 3 2 1 24 24 H 1.08997 * 109.46994 * 194.99484 * 3 2 1 25 25 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 26 26 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 6 5 4 28 28 H 1.09001 * 109.47362 * 60.00784 * 6 5 4 29 29 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 30 30 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 31 31 H 1.09002 * 113.47546 * 253.47193 * 9 8 7 32 32 H 1.09002 * 113.47901 * 23.93514 * 9 8 7 33 33 H 1.09007 * 114.34159 * 87.63651 * 10 9 8 34 34 H 0.97005 * 119.99497 * 180.02562 * 14 13 11 35 35 H 1.09001 * 113.47674 * 336.06132 * 19 8 7 36 36 H 1.08997 * 113.48057 * 106.52901 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8853 1.8825 1.3013 5 6 2.7911 1.3426 2.2659 6 6 2.5697 2.0307 3.6143 7 6 3.5398 1.4532 4.6470 8 7 3.3270 2.1134 5.9418 9 6 2.0831 1.6408 6.5779 10 6 2.8406 1.6167 7.9128 11 6 2.5213 0.4279 8.7822 12 1 3.1392 -0.4566 8.7356 13 6 1.4403 0.4694 9.6370 14 7 0.6881 1.5467 9.6940 15 14 1.0440 -1.0045 10.7141 16 1 1.7580 -0.8768 12.0100 17 1 -0.4197 -1.0597 10.9586 18 1 1.4789 -2.2487 10.0299 19 6 4.0704 1.4260 7.0141 20 1 -0.3634 0.5140 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.4941 1.9328 -0.7267 24 1 3.0648 1.2335 -0.2659 25 1 2.6148 0.2721 2.3705 26 1 3.8161 1.5116 1.9360 27 1 2.7463 3.1012 3.5094 28 1 1.5446 1.8622 3.9444 29 1 3.3636 0.3827 4.7520 30 1 4.5648 1.6220 4.3168 31 1 1.2759 2.3727 6.5498 32 1 1.7698 0.6535 6.2385 33 1 2.8261 2.5624 8.4548 34 1 -0.0723 1.5760 10.2957 35 1 4.2875 0.3814 6.7912 36 1 4.9474 1.9758 7.3558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209023102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:43 Heat of formation + Delta-G solvation = -92.559557 kcal Electronic energy + Delta-G solvation = -15885.098568 eV Core-core repulsion = 13176.371105 eV Total energy + Delta-G solvation = -2708.727463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75380 -39.80054 -37.41269 -35.07972 -33.88578 -30.08645 -28.37035 -27.18197 -26.59351 -25.50810 -24.00130 -22.11946 -20.48642 -18.73584 -18.20382 -17.82324 -17.21057 -16.70252 -16.52498 -16.09147 -15.79154 -15.19560 -15.07590 -14.66559 -14.14467 -13.86452 -13.31908 -13.05303 -12.94265 -12.80154 -12.56567 -12.44078 -12.29425 -11.90575 -11.76778 -11.55528 -11.21257 -11.08179 -10.89750 -10.81918 -10.50776 -9.70874 -8.15643 -6.27372 1.43008 1.43120 1.53874 2.42013 2.59066 2.88188 3.13708 3.39495 3.90380 4.08624 4.13242 4.23060 4.32048 4.37225 4.43680 4.47740 4.50541 4.53886 4.58557 4.67821 4.70574 4.83512 4.85288 4.96033 5.10396 5.17891 5.23206 5.49904 5.61878 5.79892 5.84430 6.24515 6.29217 6.39419 6.82219 7.41367 8.94360 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.004689 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.554305 B = 5969.877699 C = 6468.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.426 6.426 3 C 0.205 3.795 4 O -0.420 6.420 5 C 0.074 3.926 6 C -0.104 4.104 7 C 0.027 3.973 8 N -0.485 5.485 9 C 0.018 3.982 10 C 0.018 3.982 11 C -0.532 4.532 12 H 0.060 0.940 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.010 3.990 20 H 0.034 0.966 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -2.087 -18.199 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.346 6.346 3 C 0.092 3.908 4 O -0.341 6.341 5 C -0.003 4.003 6 C -0.142 4.142 7 C -0.102 4.102 8 N -0.207 5.207 9 C -0.111 4.111 10 C -0.001 4.001 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.119 4.119 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.729 -1.323 -18.257 18.507 hybrid contribution -0.716 -1.310 0.759 1.674 sum 2.013 -2.633 -17.499 17.810 Atomic orbital electron populations 1.22879 0.79695 1.03535 1.00729 1.87964 1.21919 1.30747 1.94005 1.24292 0.99947 0.82488 0.84096 1.87981 1.61481 1.62667 1.22003 1.22403 0.93056 0.96909 0.87923 1.21303 0.99071 1.01026 0.92830 1.22527 1.00424 0.96267 0.90996 1.68796 1.05579 1.45428 1.00932 1.23725 0.93414 0.96668 0.97291 1.20076 0.92163 0.96329 0.91496 1.21389 1.12297 1.00642 1.22716 0.92165 1.25851 0.96020 0.98649 0.97976 1.70104 1.17817 1.29585 1.38648 0.85544 0.77210 0.79713 0.79126 1.19819 1.20986 1.18955 1.23839 0.98278 0.97076 0.92703 0.94692 0.91965 0.88799 0.87126 0.87335 0.93355 0.90905 0.90970 0.93499 0.94595 0.89066 0.93809 0.93394 0.95100 0.92826 0.91882 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 113.37 1.23 1.73 16 2 O -0.43 -9.40 10.76 -126.21 -1.36 -10.76 16 3 C 0.21 3.78 7.07 113.37 0.80 4.58 16 4 O -0.42 -10.64 10.40 -126.21 -1.31 -11.95 16 5 C 0.07 1.83 5.82 71.98 0.42 2.25 16 6 C -0.10 -3.16 5.69 30.60 0.17 -2.99 16 7 C 0.03 0.86 4.82 86.31 0.42 1.28 16 8 N -0.49 -19.75 6.41 -927.95 -5.95 -25.70 16 9 C 0.02 0.88 6.57 83.57 0.55 1.43 16 10 C 0.02 0.96 3.77 -11.20 -0.04 0.92 16 11 C -0.53 -29.49 8.82 25.60 0.23 -29.26 16 12 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 13 C 0.01 0.80 5.46 84.65 0.46 1.26 16 14 N -0.92 -54.83 13.26 21.45 0.28 -54.54 16 15 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C 0.01 0.41 7.27 83.57 0.61 1.01 16 20 H 0.03 0.73 8.03 -2.38 -0.02 0.71 16 21 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 22 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 23 H 0.11 1.50 8.01 -2.39 -0.02 1.48 16 24 H 0.11 1.52 8.01 -2.39 -0.02 1.50 16 25 H 0.05 1.25 8.03 -2.39 -0.02 1.23 16 26 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.62 7.67 -2.39 -0.02 1.61 16 29 H 0.04 1.19 7.56 -2.39 -0.02 1.17 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 31 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.30 7.66 -2.39 -0.02 2.28 16 33 H 0.03 1.79 8.11 -2.38 -0.02 1.77 16 34 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 35 H 0.06 2.53 7.72 -2.39 -0.02 2.52 16 36 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -63.96 301.74 -0.44 -64.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.02 Total: 10.87 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.85 Total: -17.79 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -5.67 Total: -80.24 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -2.67 Total: -22.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -63.96 -0.44 -64.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209023102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.157 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds