Wall clock time and date at job start Sun Mar 29 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00175 * 2 1 4 4 C 1.50703 * 109.46876 * 293.95517 * 3 2 1 5 5 H 1.08004 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00177 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00168 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00019 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47164 * 89.99536 * 8 6 4 10 10 H 1.48501 * 109.47116 * 209.99778 * 8 6 4 11 11 H 1.48503 * 109.46919 * 329.99822 * 8 6 4 12 12 C 1.46898 * 111.00167 * 123.94973 * 2 1 3 13 13 C 1.53006 * 109.47006 * 66.05011 * 12 2 1 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 2 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 O 1.43759 * 109.63106 * 294.36013 * 15 14 13 17 17 C 1.44781 * 104.81601 * 215.80739 * 16 15 14 18 18 C 1.54912 * 101.72078 * 36.10850 * 17 16 15 19 19 O 1.43369 * 109.63471 * 175.00290 * 15 14 13 20 20 H 1.08999 * 109.47649 * 296.04573 * 1 2 3 21 21 H 1.09002 * 109.47208 * 56.04995 * 1 2 3 22 22 H 1.09007 * 109.47312 * 176.04562 * 1 2 3 23 23 H 1.08996 * 109.47388 * 53.94841 * 3 2 1 24 24 H 1.08997 * 109.47872 * 173.95385 * 3 2 1 25 25 H 0.97000 * 119.99960 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47392 * 306.05310 * 12 2 1 27 27 H 1.09001 * 109.47520 * 186.05032 * 12 2 1 28 28 H 1.09001 * 109.47002 * 299.99782 * 13 12 2 29 29 H 1.08993 * 109.46955 * 60.00219 * 13 12 2 30 30 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 31 31 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 32 32 H 1.08999 * 109.62961 * 54.60401 * 15 14 13 33 33 H 1.08998 * 110.98115 * 277.99652 * 17 16 15 34 34 H 1.09004 * 111.00681 * 154.22573 * 17 16 15 35 35 H 1.09006 * 110.68901 * 206.04113 * 18 17 16 36 36 H 1.08996 * 110.84863 * 82.90412 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0745 1.5111 -2.0488 6 6 2.0267 3.3494 -1.5286 7 7 1.7142 3.9389 -2.6620 8 14 2.9999 4.2762 -0.2311 9 1 4.4523 4.0636 -0.4561 10 1 2.6917 5.7260 -0.3228 11 1 2.6294 3.7756 1.1170 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9704 14 6 2.1792 -3.0402 2.1555 15 6 1.8159 -4.5169 1.9880 16 8 0.3894 -4.6755 2.0687 17 6 0.1952 -5.9409 2.7448 18 6 1.3651 -5.9380 3.7602 19 8 2.4257 -5.2847 3.0340 20 1 -0.3634 0.4512 0.9233 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3634 -1.0253 -0.0709 23 1 1.5610 1.9274 0.8308 24 1 3.0796 1.3445 0.1082 25 1 1.9888 4.8550 -2.8240 26 1 1.5610 -0.3872 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 0.5472 -2.3475 0.9324 29 1 2.0659 -2.6213 0.0453 30 1 3.2635 -2.9353 2.1941 31 1 1.7445 -2.6613 3.0806 32 1 2.1675 -4.8730 1.0197 33 1 0.2857 -6.7738 2.0475 34 1 -0.7664 -5.9665 3.2575 35 1 1.6492 -6.9570 4.0233 36 1 1.1026 -5.3702 4.6527 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209299942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:52 Heat of formation + Delta-G solvation = -91.382016 kcal Electronic energy + Delta-G solvation = -16041.936154 eV Core-core repulsion = 13333.259753 eV Total energy + Delta-G solvation = -2708.676401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52323 -37.09086 -35.19767 -33.87137 -32.28865 -30.06934 -28.01835 -26.86934 -24.77234 -23.52262 -22.25043 -20.87407 -19.93635 -17.44782 -16.97076 -16.77365 -16.19287 -15.11070 -14.73553 -14.60104 -14.30331 -13.91109 -13.47251 -13.25674 -12.98186 -12.71077 -12.34375 -12.08927 -11.67669 -11.55964 -11.35226 -11.02630 -10.89710 -10.52302 -10.47213 -10.43938 -10.06117 -9.90509 -9.63180 -9.23232 -8.53487 -7.30490 -6.01846 -3.98764 3.19918 3.31015 3.38067 3.40723 3.79169 4.27977 4.45164 4.57725 4.73325 4.75019 5.01153 5.04828 5.12440 5.26731 5.30324 5.36107 5.51855 5.70949 5.78319 5.83581 6.01347 6.09828 6.20795 6.31704 6.50460 6.56874 6.77184 6.85164 6.92490 7.05703 7.64075 7.96913 8.12102 8.70816 9.06978 9.60177 11.11365 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.061971 B = 0.004391 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.713212 B = 6374.990215 C = 6635.854668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.054 3.946 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.233 3.767 16 O -0.373 6.373 17 C 0.015 3.985 18 C 0.021 3.979 19 O -0.388 6.388 20 H 0.009 0.991 21 H 0.078 0.922 22 H 0.051 0.949 23 H -0.013 1.013 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -18.990 12.956 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.256 5.256 3 C 0.034 3.966 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.074 4.074 13 C -0.149 4.149 14 C -0.168 4.168 15 C 0.138 3.862 16 O -0.293 6.293 17 C -0.062 4.062 18 C -0.056 4.056 19 O -0.309 6.309 20 H 0.028 0.972 21 H 0.097 0.903 22 H 0.069 0.931 23 H 0.005 0.995 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.175 -18.886 12.373 22.609 hybrid contribution 0.212 0.895 1.421 1.692 sum -0.963 -17.991 13.794 22.691 Atomic orbital electron populations 1.22279 0.88362 1.00053 1.00633 1.61917 1.07419 1.16295 1.40008 1.20188 0.94863 0.84317 0.97204 1.21062 1.35502 0.97178 1.00882 0.90116 1.24906 0.95846 0.97361 0.95300 1.69899 1.47050 1.13275 1.23870 0.86858 0.80900 0.79229 0.82754 1.20129 1.21213 1.19331 1.22074 0.99828 0.93122 0.92422 1.21486 1.01620 0.94646 0.97104 1.21987 1.02145 0.92175 1.00456 1.24213 0.77912 0.92971 0.91111 1.89301 1.22704 1.38070 1.79249 1.24366 1.00308 0.87372 0.94138 1.24165 0.86900 0.98781 0.95744 1.88894 1.30953 1.64821 1.46210 0.97207 0.90309 0.93071 0.99488 0.95887 0.92704 0.96084 0.91541 0.91257 0.91081 0.89916 0.91155 0.89602 0.90669 0.87456 0.88424 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.68 4.75 -244.37 -1.16 -12.84 16 3 C 0.16 4.05 3.79 -4.98 -0.02 4.03 16 4 C -0.51 -14.82 9.01 -34.44 -0.31 -15.13 16 5 H 0.08 2.55 7.37 -52.48 -0.39 2.17 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 8 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 12 C 0.05 0.97 4.96 -3.82 -0.02 0.95 16 13 C -0.11 -1.64 5.04 -26.73 -0.13 -1.78 16 14 C -0.13 -1.64 5.30 -26.73 -0.14 -1.78 16 15 C 0.23 2.76 4.01 37.16 0.15 2.91 16 16 O -0.37 -4.51 10.92 -59.04 -0.64 -5.16 16 17 C 0.01 0.12 7.95 38.17 0.30 0.42 16 18 C 0.02 0.16 8.07 38.17 0.31 0.47 16 19 O -0.39 -4.49 11.21 -59.04 -0.66 -5.16 16 20 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 21 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 22 H 0.05 0.90 6.47 -51.92 -0.34 0.56 16 23 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 24 H 0.02 0.58 7.36 -51.93 -0.38 0.20 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 28 H 0.07 1.07 6.26 -51.93 -0.33 0.74 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -32.49 290.86 -7.35 -39.85 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.96 Total: -4.28 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.59 Total: -6.76 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.39 Total: -40.13 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.31 Total: -10.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.49 -7.35 -39.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209299942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.536 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds