Wall clock time and date at job start Sun Mar 29 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00175 * 2 1 4 4 C 1.50703 * 109.46876 * 293.95517 * 3 2 1 5 5 H 1.08004 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00177 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00168 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00019 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47164 * 89.99536 * 8 6 4 10 10 H 1.48501 * 109.47116 * 209.99778 * 8 6 4 11 11 H 1.48503 * 109.46919 * 329.99822 * 8 6 4 12 12 C 1.46898 * 111.00167 * 123.94973 * 2 1 3 13 13 C 1.53006 * 109.47006 * 66.05011 * 12 2 1 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 2 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 O 1.43759 * 109.63106 * 294.36013 * 15 14 13 17 17 C 1.44781 * 104.81601 * 215.80739 * 16 15 14 18 18 C 1.54912 * 101.72078 * 36.10850 * 17 16 15 19 19 O 1.43369 * 109.63471 * 175.00290 * 15 14 13 20 20 H 1.08999 * 109.47649 * 296.04573 * 1 2 3 21 21 H 1.09002 * 109.47208 * 56.04995 * 1 2 3 22 22 H 1.09007 * 109.47312 * 176.04562 * 1 2 3 23 23 H 1.08996 * 109.47388 * 53.94841 * 3 2 1 24 24 H 1.08997 * 109.47872 * 173.95385 * 3 2 1 25 25 H 0.97000 * 119.99960 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47392 * 306.05310 * 12 2 1 27 27 H 1.09001 * 109.47520 * 186.05032 * 12 2 1 28 28 H 1.09001 * 109.47002 * 299.99782 * 13 12 2 29 29 H 1.08993 * 109.46955 * 60.00219 * 13 12 2 30 30 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 31 31 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 32 32 H 1.08999 * 109.62961 * 54.60401 * 15 14 13 33 33 H 1.08998 * 110.98115 * 277.99652 * 17 16 15 34 34 H 1.09004 * 111.00681 * 154.22573 * 17 16 15 35 35 H 1.09006 * 110.68901 * 206.04113 * 18 17 16 36 36 H 1.08996 * 110.84863 * 82.90412 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0745 1.5111 -2.0488 6 6 2.0267 3.3494 -1.5286 7 7 1.7142 3.9389 -2.6620 8 14 2.9999 4.2762 -0.2311 9 1 4.4523 4.0636 -0.4561 10 1 2.6917 5.7260 -0.3228 11 1 2.6294 3.7756 1.1170 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9704 14 6 2.1792 -3.0402 2.1555 15 6 1.8159 -4.5169 1.9880 16 8 0.3894 -4.6755 2.0687 17 6 0.1952 -5.9409 2.7448 18 6 1.3651 -5.9380 3.7602 19 8 2.4257 -5.2847 3.0340 20 1 -0.3634 0.4512 0.9233 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3634 -1.0253 -0.0709 23 1 1.5610 1.9274 0.8308 24 1 3.0796 1.3445 0.1082 25 1 1.9888 4.8550 -2.8240 26 1 1.5610 -0.3872 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 0.5472 -2.3475 0.9324 29 1 2.0659 -2.6213 0.0453 30 1 3.2635 -2.9353 2.1941 31 1 1.7445 -2.6613 3.0806 32 1 2.1675 -4.8730 1.0197 33 1 0.2857 -6.7738 2.0475 34 1 -0.7664 -5.9665 3.2575 35 1 1.6492 -6.9570 4.0233 36 1 1.1026 -5.3702 4.6527 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209299942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:52 Heat of formation + Delta-G solvation = -115.225358 kcal Electronic energy + Delta-G solvation = -16042.970079 eV Core-core repulsion = 13333.259753 eV Total energy + Delta-G solvation = -2709.710326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.30082 -38.70603 -36.00702 -35.31002 -34.25500 -31.08592 -29.76085 -28.22247 -26.34912 -24.24664 -23.57322 -22.20640 -21.57110 -18.98288 -18.21446 -17.72214 -17.09487 -16.57936 -16.31083 -16.05549 -15.65792 -14.99511 -14.82592 -14.54425 -14.33451 -13.92768 -13.70466 -13.42720 -13.16600 -12.99536 -12.61903 -12.46536 -12.32898 -12.16530 -12.10197 -11.83140 -11.44797 -11.39015 -11.16867 -10.78512 -10.57377 -9.03518 -8.28615 -6.32278 1.34790 1.36266 1.47167 2.34462 2.49135 2.94748 3.04356 3.31461 3.70151 3.89836 3.95736 4.08699 4.12843 4.24506 4.42238 4.46686 4.53910 4.62902 4.65571 4.68684 4.76938 4.82450 4.89216 4.93315 5.01636 5.04170 5.17107 5.29485 5.40560 5.52831 5.99393 6.08634 6.35947 6.66084 6.73865 7.31432 8.88081 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.061971 B = 0.004391 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.713212 B = 6374.990215 C = 6635.854668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.551 5.551 3 C 0.170 3.830 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.253 1.253 12 C 0.054 3.946 13 C -0.098 4.098 14 C -0.122 4.122 15 C 0.234 3.766 16 O -0.398 6.398 17 C 0.010 3.990 18 C 0.015 3.985 19 O -0.405 6.405 20 H 0.017 0.983 21 H 0.047 0.953 22 H 0.078 0.922 23 H -0.013 1.013 24 H 0.029 0.971 25 H 0.267 0.733 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -20.080 15.216 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.275 5.275 3 C 0.042 3.958 4 C -0.557 4.557 5 H 0.056 0.944 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.177 1.177 12 C -0.074 4.074 13 C -0.136 4.136 14 C -0.160 4.160 15 C 0.139 3.861 16 O -0.319 6.319 17 C -0.066 4.066 18 C -0.061 4.061 19 O -0.327 6.327 20 H 0.035 0.965 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.004 0.996 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.526 -20.012 14.649 24.807 hybrid contribution -0.075 1.124 0.682 1.317 sum -0.601 -18.888 15.331 24.334 Atomic orbital electron populations 1.22208 0.87658 1.01292 0.99573 1.61835 1.08277 1.14737 1.42614 1.19964 0.95159 0.85939 0.94687 1.21284 1.35024 0.97607 1.01790 0.94412 1.25869 0.97010 0.98384 0.97754 1.70053 1.48609 1.13951 1.26287 0.85684 0.79477 0.77634 0.79956 1.18791 1.20565 1.17719 1.22174 1.00018 0.94145 0.91033 1.21333 1.01288 0.92920 0.98052 1.21887 1.02363 0.92657 0.99134 1.24107 0.78148 0.92353 0.91501 1.89270 1.22625 1.40121 1.79847 1.24642 1.01374 0.86237 0.94319 1.24424 0.86139 1.00000 0.95494 1.88870 1.32306 1.65025 1.46473 0.96450 0.93397 0.90360 0.99583 0.95269 0.92369 0.95412 0.91019 0.91781 0.91473 0.89321 0.91230 0.89376 0.89422 0.85398 0.85861 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.14 127.69 1.17 2.81 16 2 N -0.55 -23.84 4.75 -927.06 -4.41 -28.25 16 3 C 0.17 8.46 3.79 85.56 0.32 8.78 16 4 C -0.52 -30.95 9.01 25.60 0.23 -30.72 16 5 H 0.04 2.51 7.37 -2.91 -0.02 2.48 16 6 C 0.01 0.42 5.47 84.65 0.46 0.88 16 7 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 8 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 9 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 12 C 0.05 1.84 4.96 86.31 0.43 2.26 16 13 C -0.10 -2.75 5.04 30.60 0.15 -2.60 16 14 C -0.12 -2.86 5.30 30.59 0.16 -2.70 16 15 C 0.23 5.15 4.01 71.98 0.29 5.44 16 16 O -0.40 -8.90 10.92 -126.22 -1.38 -10.28 16 17 C 0.01 0.13 7.95 72.64 0.58 0.71 16 18 C 0.02 0.20 8.07 72.64 0.59 0.79 16 19 O -0.41 -8.58 11.21 -126.22 -1.42 -9.99 16 20 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 21 H 0.05 2.20 6.76 -2.39 -0.02 2.18 16 22 H 0.08 2.68 6.47 -2.38 -0.02 2.67 16 23 H -0.01 -0.67 7.18 -2.39 -0.02 -0.69 16 24 H 0.03 1.42 7.36 -2.39 -0.02 1.40 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 28 H 0.06 1.87 6.26 -2.39 -0.01 1.86 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -70.36 290.86 0.34 -70.02 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.98 Total: 6.12 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.38 Total: -14.34 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.11 Total: -88.25 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -2.79 Total: -20.27 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -70.36 0.34 -70.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209299942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.204 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds