Wall clock time and date at job start Sun Mar 29 2020 21:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42911 * 114.00028 * 2 1 4 4 C 1.52998 * 109.46992 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46820 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46811 * 179.97438 * 5 4 3 7 7 C 1.42905 * 113.99641 * 179.97438 * 6 5 4 8 8 H 1.08993 * 110.64055 * 26.86435 * 7 6 5 9 9 C 1.55157 * 110.71656 * 150.00029 * 7 6 5 10 10 C 1.54918 * 101.58155 * 154.04156 * 9 7 6 11 11 N 1.47425 * 104.82827 * 322.99497 * 10 9 7 12 12 C 1.36944 * 125.64112 * 204.07745 * 11 10 9 13 13 H 1.08005 * 119.99478 * 180.02562 * 12 11 10 14 14 C 1.38808 * 120.00358 * 0.05504 * 12 11 10 15 15 N 1.31623 * 119.99920 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00189 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47361 * 119.99855 * 16 14 12 19 19 H 1.48503 * 109.47440 * 240.00140 * 16 14 12 20 20 C 1.47015 * 108.70882 * 24.12597 * 11 10 9 21 21 H 1.08999 * 109.46830 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47002 * 300.00257 * 1 2 3 23 23 H 1.09004 * 109.47184 * 59.99777 * 1 2 3 24 24 H 1.08999 * 109.46899 * 60.00280 * 3 2 1 25 25 H 1.08997 * 109.46681 * 299.99793 * 3 2 1 26 26 H 1.08998 * 109.47183 * 59.99706 * 4 3 2 27 27 H 1.09002 * 109.46942 * 300.00024 * 4 3 2 28 28 H 1.08999 * 109.46986 * 60.00040 * 5 4 3 29 29 H 1.08995 * 109.47051 * 299.99909 * 5 4 3 30 30 H 1.09001 * 111.00846 * 272.11864 * 9 7 6 31 31 H 1.09000 * 111.00346 * 35.97396 * 9 7 6 32 32 H 1.08999 * 110.35942 * 81.82689 * 10 9 7 33 33 H 1.08996 * 110.36556 * 204.15522 * 10 9 7 34 34 H 0.96999 * 120.00120 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.88350 * 239.52260 * 20 11 10 36 36 H 1.08997 * 110.01690 * 118.42776 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 8 5.5823 2.4696 0.0000 7 6 6.2648 3.7251 0.0000 8 1 5.6488 4.4972 0.4609 9 6 7.6311 3.6071 0.7256 10 6 8.4391 4.7458 0.0544 11 7 8.0065 4.7353 -1.3549 12 6 8.7310 5.2103 -2.4155 13 1 8.3240 5.1571 -3.4145 14 6 9.9886 5.7594 -2.2068 15 7 10.4847 5.8242 -0.9893 16 14 10.9771 6.4066 -3.6536 17 1 10.2024 6.2180 -4.9064 18 1 11.2555 7.8518 -3.4561 19 1 12.2596 5.6639 -3.7489 20 6 6.6683 4.1316 -1.4330 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.6887 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8567 0.6439 -0.8908 27 1 3.8574 0.6436 0.8891 28 1 3.8364 3.1228 0.8904 29 1 3.8358 3.1239 -0.8895 30 1 7.5219 3.7838 1.7957 31 1 8.0915 2.6375 0.5363 32 1 8.2009 5.7035 0.5172 33 1 9.5080 4.5449 0.1247 34 1 11.3633 6.2083 -0.8434 35 1 6.6959 3.2507 -2.0744 36 1 5.9551 4.8552 -1.8278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211347477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:00 Heat of formation + Delta-G solvation = -92.667651 kcal Electronic energy + Delta-G solvation = -15920.015630 eV Core-core repulsion = 13211.283480 eV Total energy + Delta-G solvation = -2708.732151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97045 -38.91688 -37.61242 -34.46914 -33.35928 -31.05985 -28.94187 -27.87048 -26.46460 -25.47880 -22.69276 -22.04371 -21.68989 -18.98408 -18.12565 -17.34682 -17.16209 -16.72026 -16.38646 -15.85336 -15.73568 -15.32760 -14.85771 -14.30503 -14.08991 -13.61193 -13.27728 -13.00050 -12.82005 -12.75311 -12.62427 -12.50054 -12.06213 -11.98971 -11.92947 -11.90744 -11.73829 -11.32416 -10.77751 -10.62383 -10.46705 -8.92579 -7.79595 -5.25110 1.46742 1.48286 1.58745 2.34427 2.50452 3.14503 3.31605 3.70689 3.82535 3.95588 4.06323 4.13523 4.18146 4.29050 4.43911 4.47464 4.55445 4.57682 4.58835 4.64873 4.79643 4.86918 4.95183 5.00999 5.03953 5.11571 5.19258 5.43839 5.59766 5.76695 6.20919 6.27037 6.36254 7.08163 7.74272 8.37918 9.22770 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.063559 B = 0.004175 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.432577 B = 6704.439173 C = 7020.597119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.067 3.933 4 C -0.113 4.113 5 C 0.060 3.940 6 O -0.391 6.391 7 C 0.093 3.907 8 H 0.087 0.913 9 C -0.127 4.127 10 C 0.154 3.846 11 N -0.626 5.626 12 C -0.243 4.243 13 H 0.080 0.920 14 C -0.067 4.067 15 N -0.949 5.949 16 Si 0.985 3.015 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.113 3.887 21 H 0.096 0.904 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.061 0.939 32 H -0.002 1.002 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.023 0.977 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 -7.171 3.973 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.009 4.009 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.310 6.310 7 C 0.035 3.965 8 H 0.105 0.895 9 C -0.166 4.166 10 C 0.029 3.971 11 N -0.354 5.354 12 C -0.372 4.372 13 H 0.098 0.902 14 C -0.259 4.259 15 N -0.598 5.598 16 Si 0.812 3.188 17 H -0.192 1.192 18 H -0.216 1.216 19 H -0.217 1.217 20 C -0.013 4.013 21 H 0.114 0.886 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.566 -7.433 3.917 19.472 hybrid contribution 0.449 0.891 -0.751 1.249 sum -17.118 -6.541 3.166 18.596 Atomic orbital electron populations 1.22941 0.79225 1.03873 1.01028 1.87830 1.21721 1.28702 1.95666 1.22381 0.92260 0.84611 1.01662 1.21306 0.93795 0.96317 1.03697 1.22522 0.80340 0.97367 1.01453 1.87893 1.19055 1.29093 1.94955 1.22972 0.93513 0.85587 0.94429 0.89465 1.22993 0.94289 0.99511 0.99794 1.21752 0.99793 0.93092 0.82459 1.44719 1.15411 1.71064 1.04157 1.19509 0.97840 1.32103 0.87727 0.90237 1.25685 0.98602 1.02004 0.99643 1.70039 1.18134 1.51409 1.20268 0.84919 0.78156 0.77210 0.78466 1.19185 1.21585 1.21673 1.21842 0.87045 0.95526 0.96851 0.88590 0.92875 0.93125 0.91477 0.92048 0.91630 0.90881 0.91325 0.92616 0.88872 0.91990 0.98395 0.90504 0.94125 0.95863 0.95339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.70 10.70 -148.98 -1.59 -10.30 16 3 C 0.07 1.20 5.94 71.98 0.43 1.63 16 4 C -0.11 -2.52 5.95 30.59 0.18 -2.34 16 5 C 0.06 1.44 5.77 71.98 0.42 1.85 16 6 O -0.39 -12.99 10.08 -148.98 -1.50 -14.49 16 7 C 0.09 3.38 3.44 31.78 0.11 3.49 16 8 H 0.09 2.76 7.82 -2.39 -0.02 2.74 16 9 C -0.13 -5.05 6.81 31.99 0.22 -4.83 16 10 C 0.15 7.82 5.89 86.86 0.51 8.33 16 11 N -0.63 -33.84 3.39 -691.99 -2.35 -36.19 16 12 C -0.24 -14.11 10.27 84.03 0.86 -13.24 16 13 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 14 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 15 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 16 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 C 0.11 4.99 7.02 86.73 0.61 5.60 16 21 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.08 4.43 5.87 -2.39 -0.01 4.42 16 34 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.84 296.45 2.87 -64.97 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.02 Total: 6.09 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.05 Total: -1.33 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.13 Total: -93.25 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -3.10 Total: -24.79 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.84 2.87 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211347477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.697 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds