Wall clock time and date at job start Sun Mar 29 2020 21:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47402 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.47032 * 59.99941 * 3 2 1 7 7 C 1.37871 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00550 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00314 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47080 * 300.00200 * 9 7 2 11 11 C 1.53008 * 109.46819 * 59.99366 * 9 7 2 12 12 Cl 1.80300 * 109.46854 * 185.00371 * 11 9 7 13 13 O 1.42899 * 109.47338 * 179.97438 * 9 7 2 14 14 C 1.42903 * 113.99629 * 150.00083 * 13 9 7 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 9 16 16 N 1.30496 * 125.64892 * 180.02562 * 15 14 13 17 17 C 1.34130 * 109.25832 * 180.02562 * 16 15 14 18 18 C 1.34675 * 108.01805 * 0.02562 * 17 16 15 19 19 N 1.35041 * 125.64794 * 359.72194 * 15 14 13 20 20 H 0.96995 * 126.40280 * 359.97438 * 19 15 14 21 21 H 0.97004 * 119.99626 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47264 * 305.00848 * 11 9 7 23 23 H 1.09000 * 109.46477 * 65.00408 * 11 9 7 24 24 H 1.09002 * 109.47382 * 59.99956 * 14 13 9 25 25 H 1.09001 * 109.46938 * 299.99942 * 14 13 9 26 26 H 1.07999 * 125.99191 * 180.02562 * 17 16 15 27 27 H 1.07993 * 126.59118 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6533 15 6 2.7522 -5.8369 0.5932 16 7 2.6428 -7.0381 1.0912 17 6 3.7722 -7.7209 0.8519 18 6 4.6138 -6.9117 0.1805 19 7 3.9645 -5.7187 0.0102 20 1 4.3117 -4.9340 -0.4421 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2756 -1.7047 -1.2954 23 1 1.0038 -2.6123 -2.1365 24 1 0.7946 -5.1109 0.1530 25 1 1.4711 -4.5325 1.6945 26 1 3.9718 -8.7407 1.1460 27 1 5.6078 -7.1583 -0.1621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222874261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:48 Heat of formation + Delta-G solvation = -7.529760 kcal Electronic energy + Delta-G solvation = -13847.442583 eV Core-core repulsion = 11246.019353 eV Total energy + Delta-G solvation = -2601.423230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.66690 -37.33776 -34.81903 -33.41421 -32.09444 -30.53812 -28.80942 -25.60958 -25.20129 -21.43037 -20.82647 -20.24059 -17.88243 -16.65000 -15.88105 -15.33511 -14.68341 -14.08779 -13.94703 -13.63000 -13.39638 -12.86158 -12.40491 -12.15476 -11.58192 -11.23720 -11.10143 -10.91665 -10.49227 -10.06911 -9.78178 -9.73075 -9.50009 -9.45233 -8.72310 -8.49697 -7.91949 -6.41701 -4.48979 2.36561 3.10379 3.20048 3.24439 3.37862 3.41009 3.52332 4.02994 4.32823 4.93614 5.28977 5.42771 5.60345 5.87310 6.01196 6.13107 6.26070 6.37136 6.42269 6.77824 6.98830 7.18832 7.52444 7.69169 7.81595 8.13558 8.39529 8.65796 9.19167 10.65456 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.007815 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.753250 B = 3581.930467 C = 4327.861983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.518 4.518 8 H 0.074 0.926 9 C 0.219 3.781 10 H 0.037 0.963 11 C -0.034 4.034 12 Cl -0.246 7.246 13 O -0.396 6.396 14 C 0.129 3.871 15 C 0.233 3.767 16 N -0.500 5.500 17 C -0.032 4.032 18 C -0.071 4.071 19 N -0.550 5.550 20 H 0.427 0.573 21 H 0.270 0.730 22 H 0.130 0.870 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -6.704 -1.344 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.555 4.555 8 H 0.092 0.908 9 C 0.162 3.838 10 H 0.055 0.945 11 C -0.097 4.097 12 Cl -0.221 7.221 13 O -0.315 6.315 14 C 0.050 3.950 15 C -0.031 4.031 16 N -0.222 5.222 17 C -0.181 4.181 18 C -0.206 4.206 19 N -0.152 5.152 20 H 0.266 0.734 21 H 0.080 0.920 22 H 0.148 0.852 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.184 0.816 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.449 -6.984 -1.004 8.341 hybrid contribution 1.054 1.377 -0.615 1.840 sum 5.502 -5.606 -1.619 8.020 Atomic orbital electron populations 1.69814 1.05974 1.27804 1.49020 1.24994 0.95147 0.99809 0.94166 0.86183 0.79936 0.81975 0.77917 1.19431 1.20621 1.20569 1.21064 0.94168 0.88220 1.52094 0.90832 1.20058 0.87188 0.83794 0.92722 0.94498 1.25897 0.95301 0.85902 1.02554 1.98614 1.75957 1.48587 1.98923 1.87688 1.44352 1.21726 1.77750 1.20961 0.92400 0.83134 0.98489 1.23276 0.87191 0.95037 0.97631 1.70133 1.25244 1.02992 1.23815 1.22256 0.91023 1.00458 1.04334 1.22706 1.00878 0.87412 1.09565 1.43216 1.14250 1.14052 1.43714 0.73441 0.91967 0.85223 0.90950 0.88984 0.91396 0.81597 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.98 11.29 55.43 0.63 -22.35 15 2 C 0.06 1.55 5.29 -17.82 -0.09 1.46 15 3 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.52 -13.13 8.89 -34.44 -0.31 -13.44 15 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 15 9 C 0.22 5.16 2.38 -27.88 -0.07 5.09 15 10 H 0.04 0.94 7.79 -51.93 -0.40 0.54 15 11 C -0.03 -0.76 6.17 37.16 0.23 -0.53 15 12 Cl -0.25 -4.99 26.09 -51.86 -1.35 -6.35 15 13 O -0.40 -8.49 9.45 -35.23 -0.33 -8.82 15 14 C 0.13 2.52 6.16 36.01 0.22 2.74 15 15 C 0.23 4.32 7.96 -155.42 -1.24 3.08 15 16 N -0.50 -9.29 11.25 -10.81 -0.12 -9.42 15 17 C -0.03 -0.48 11.87 -17.81 -0.21 -0.69 15 18 C -0.07 -0.95 12.04 -16.56 -0.20 -1.15 15 19 N -0.55 -8.66 5.99 -10.23 -0.06 -8.72 15 20 H 0.43 6.16 8.59 -40.82 -0.35 5.80 15 21 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 22 H 0.13 3.13 5.95 -51.93 -0.31 2.82 15 23 H 0.07 1.56 8.14 -51.93 -0.42 1.14 15 24 H 0.09 1.84 5.09 -51.93 -0.26 1.57 15 25 H 0.07 1.32 8.09 -51.93 -0.42 0.90 15 26 H 0.17 1.95 8.06 -52.49 -0.42 1.52 15 27 H 0.17 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 251.56 15.07 3.79 3.79 Total: -1.00 -27.33 251.56 -6.70 -34.02 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -2.56 Total: 6.68 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.66 Total: -3.44 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.44 Total: -40.49 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.33 Total: -8.82 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -4.99 SS G_CDS: -1.35 Total: -6.35 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.33 -6.70 -34.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222874261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.494 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds