Wall clock time and date at job start Sun Mar 29 2020 21:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47402 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.47032 * 59.99941 * 3 2 1 7 7 C 1.37871 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00550 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00314 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47080 * 300.00200 * 9 7 2 11 11 C 1.53008 * 109.46819 * 59.99366 * 9 7 2 12 12 Cl 1.80300 * 109.46854 * 185.00371 * 11 9 7 13 13 O 1.42899 * 109.47338 * 179.97438 * 9 7 2 14 14 C 1.42903 * 113.99629 * 150.00083 * 13 9 7 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 9 16 16 N 1.30496 * 125.64892 * 180.02562 * 15 14 13 17 17 C 1.34130 * 109.25832 * 180.02562 * 16 15 14 18 18 C 1.34675 * 108.01805 * 0.02562 * 17 16 15 19 19 N 1.35041 * 125.64794 * 359.72194 * 15 14 13 20 20 H 0.96995 * 126.40280 * 359.97438 * 19 15 14 21 21 H 0.97004 * 119.99626 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47264 * 305.00848 * 11 9 7 23 23 H 1.09000 * 109.46477 * 65.00408 * 11 9 7 24 24 H 1.09002 * 109.47382 * 59.99956 * 14 13 9 25 25 H 1.09001 * 109.46938 * 299.99942 * 14 13 9 26 26 H 1.07999 * 125.99191 * 180.02562 * 17 16 15 27 27 H 1.07993 * 126.59118 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1796 -3.5853 0.0005 14 6 1.6979 -4.7618 0.6533 15 6 2.7522 -5.8369 0.5932 16 7 2.6428 -7.0381 1.0912 17 6 3.7722 -7.7209 0.8519 18 6 4.6138 -6.9117 0.1805 19 7 3.9645 -5.7187 0.0102 20 1 4.3117 -4.9340 -0.4421 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2756 -1.7047 -1.2954 23 1 1.0038 -2.6123 -2.1365 24 1 0.7946 -5.1109 0.1530 25 1 1.4711 -4.5325 1.6945 26 1 3.9718 -8.7407 1.1460 27 1 5.6078 -7.1583 -0.1621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222874261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:48 Heat of formation + Delta-G solvation = -24.419563 kcal Electronic energy + Delta-G solvation = -13848.174979 eV Core-core repulsion = 11246.019353 eV Total energy + Delta-G solvation = -2602.155627 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.90717 -39.06856 -36.54347 -35.28710 -33.36236 -32.08648 -30.43762 -27.29934 -26.85660 -23.04967 -22.24218 -21.55442 -19.29243 -18.41162 -17.63051 -16.87469 -16.42205 -15.59283 -15.51360 -14.89342 -14.69523 -14.32219 -14.06061 -13.93972 -13.27843 -12.96472 -12.86924 -12.69387 -12.23744 -11.77092 -11.35049 -11.22766 -11.06075 -11.01062 -10.61017 -10.14174 -9.21833 -8.32910 -6.47814 1.15340 1.40415 1.45340 1.57150 1.62097 2.15462 2.29095 2.33981 2.70625 3.01810 3.97281 4.25504 4.37930 4.39070 4.45086 4.54875 4.64132 4.75680 4.92084 5.22958 5.31877 5.57340 5.83421 5.91868 6.34230 6.48986 6.72562 7.14025 7.24585 8.74052 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.007815 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.753250 B = 3581.930467 C = 4327.861983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.223 3.777 10 H 0.012 0.988 11 C -0.025 4.025 12 Cl -0.229 7.229 13 O -0.395 6.395 14 C 0.135 3.865 15 C 0.198 3.802 16 N -0.525 5.525 17 C -0.055 4.055 18 C -0.044 4.044 19 N -0.548 5.548 20 H 0.432 0.568 21 H 0.274 0.726 22 H 0.112 0.888 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.196 0.804 27 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 -7.092 -1.833 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.167 3.833 10 H 0.030 0.970 11 C -0.088 4.088 12 Cl -0.203 7.203 13 O -0.315 6.315 14 C 0.056 3.944 15 C -0.066 4.066 16 N -0.248 5.248 17 C -0.203 4.203 18 C -0.179 4.179 19 N -0.151 5.151 20 H 0.271 0.729 21 H 0.083 0.917 22 H 0.130 0.870 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.213 0.787 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.003 -7.383 -1.496 9.633 hybrid contribution 0.595 1.363 -0.445 1.553 sum 6.598 -6.020 -1.942 9.140 Atomic orbital electron populations 1.69907 1.07130 1.28704 1.49199 1.25730 0.95870 1.02674 0.93490 0.85229 0.78790 0.78059 0.77956 1.19071 1.19946 1.20415 1.21286 0.94119 0.89391 1.52916 0.91360 1.19833 0.87172 0.84157 0.92183 0.97037 1.25552 0.95032 0.86126 1.02070 1.98611 1.75437 1.47295 1.98921 1.87654 1.43930 1.21893 1.77979 1.20815 0.93103 0.82788 0.97678 1.22891 0.88312 0.95045 1.00389 1.70061 1.27238 1.03329 1.24151 1.22885 0.90329 1.01981 1.05091 1.23485 1.01929 0.85592 1.06913 1.43292 1.13604 1.15061 1.43123 0.72868 0.91695 0.86956 0.90368 0.89661 0.92243 0.78668 0.76332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.38 11.29 21.44 0.24 -47.14 15 2 C 0.02 1.16 5.29 84.65 0.45 1.61 15 3 Si 0.98 39.80 29.54 68.60 2.03 41.83 15 4 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 6 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.54 -27.57 8.89 25.60 0.23 -27.34 15 8 H 0.07 3.48 7.81 -2.91 -0.02 3.46 15 9 C 0.22 10.72 2.38 29.85 0.07 10.79 15 10 H 0.01 0.62 7.79 -2.39 -0.02 0.60 15 11 C -0.02 -1.12 6.17 71.98 0.44 -0.67 15 12 Cl -0.23 -9.24 26.09 -2.72 -0.07 -9.31 15 13 O -0.40 -17.13 9.45 -148.98 -1.41 -18.54 15 14 C 0.13 5.36 6.16 71.24 0.44 5.80 15 15 C 0.20 7.23 7.96 138.13 1.10 8.33 15 16 N -0.53 -19.07 11.25 -188.13 -2.12 -21.19 15 17 C -0.06 -1.53 11.87 83.52 0.99 -0.54 15 18 C -0.04 -1.05 12.04 83.09 1.00 -0.05 15 19 N -0.55 -16.29 5.99 -186.27 -1.12 -17.41 15 20 H 0.43 11.76 8.59 -92.71 -0.80 10.97 15 21 H 0.27 13.40 8.31 -92.71 -0.77 12.63 15 22 H 0.11 5.49 5.95 -2.39 -0.01 5.48 15 23 H 0.08 3.37 8.14 -2.39 -0.02 3.35 15 24 H 0.09 3.46 5.09 -2.39 -0.01 3.45 15 25 H 0.06 2.41 8.09 -2.39 -0.02 2.39 15 26 H 0.20 3.97 8.06 -2.91 -0.02 3.95 15 27 H 0.22 2.92 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -57.98 251.56 2.68 -55.30 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.40 Total: 18.54 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.72 Total: -2.08 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.99 Total: -85.74 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.41 Total: -18.54 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 17 Polarization: -9.24 SS G_CDS: -0.07 Total: -9.31 kcal Total: -57.98 2.68 -55.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222874261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.883 kcal (2) G-P(sol) polarization free energy of solvation -57.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds