Wall clock time and date at job start Sun Mar 29 2020 21:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48505 * 109.47075 * 264.99405 * 3 2 1 5 5 H 1.48501 * 109.47322 * 24.99001 * 3 2 1 6 6 H 1.48501 * 109.47440 * 144.99782 * 3 2 1 7 7 C 1.37871 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00254 * 189.48930 * 7 2 1 9 9 C 1.50703 * 120.00106 * 9.48583 * 7 2 1 10 10 H 1.09002 * 109.47031 * 305.45959 * 9 7 2 11 11 C 1.53001 * 109.46914 * 65.45416 * 9 7 2 12 12 Cl 1.80301 * 109.47147 * 186.33457 * 11 9 7 13 13 O 1.42895 * 109.47612 * 185.45446 * 9 7 2 14 14 C 1.42899 * 114.00397 * 150.00088 * 13 9 7 15 15 C 1.50692 * 109.47458 * 180.02562 * 14 13 9 16 16 C 1.34677 * 126.59083 * 0.16095 * 15 14 13 17 17 N 1.34127 * 108.01848 * 180.28923 * 16 15 14 18 18 C 1.30496 * 109.25874 * 359.72825 * 17 16 15 19 19 N 1.35048 * 108.70185 * 0.02562 * 18 17 16 20 20 H 0.96994 * 126.39795 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00622 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47103 * 306.33850 * 11 9 7 23 23 H 1.08998 * 109.46984 * 66.33353 * 11 9 7 24 24 H 1.09002 * 109.46928 * 59.99549 * 14 13 9 25 25 H 1.09003 * 109.46977 * 300.00131 * 14 13 9 26 26 H 1.07998 * 125.98894 * 0.05759 * 16 15 14 27 27 H 1.08006 * 125.65355 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3975 2.6810 0.5915 6 1 3.4897 1.4732 0.8031 7 6 2.0045 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1537 9 6 1.2666 -2.4901 -0.2162 10 1 0.4564 -2.5719 0.5084 11 6 0.6887 -2.5184 -1.6326 12 17 -0.3481 -3.9803 -1.8297 13 8 2.1685 -3.5856 -0.0479 14 6 1.5498 -4.7787 0.4376 15 6 2.5880 -5.8620 0.5772 16 6 3.9016 -5.7555 0.3001 17 7 4.4759 -6.9414 0.5506 18 6 3.5693 -7.7771 0.9778 19 7 2.3776 -7.1426 1.0123 20 1 1.5302 -7.5243 1.2898 21 1 -0.4851 0.8400 0.0004 22 1 0.0896 -1.6230 -1.7985 23 1 1.5028 -2.5500 -2.3566 24 1 0.7804 -5.1004 -0.2642 25 1 1.0963 -4.5832 1.4094 26 1 4.4038 -4.8714 -0.0639 27 1 3.7429 -8.8059 1.2568 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222999673.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:49 Heat of formation + Delta-G solvation = -5.626943 kcal Electronic energy + Delta-G solvation = -13810.739963 eV Core-core repulsion = 11209.399246 eV Total energy + Delta-G solvation = -2601.340718 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.69427 -37.25997 -34.86741 -33.32693 -32.29510 -30.53003 -28.72073 -25.40736 -25.02180 -21.45123 -21.00736 -20.31854 -17.87487 -16.54941 -15.86754 -15.25077 -14.59515 -14.18189 -13.92965 -13.75399 -13.03287 -12.93582 -12.38436 -12.25143 -11.63968 -11.10819 -11.01922 -10.93288 -10.44558 -10.11092 -9.75494 -9.68718 -9.47595 -9.42764 -8.62953 -8.46492 -7.84965 -6.36184 -4.40198 2.32521 3.16443 3.20663 3.26020 3.28984 3.35104 3.49279 4.19264 4.75585 4.92855 4.99564 5.43140 5.70815 5.91129 5.99094 6.07142 6.23028 6.36926 6.53040 6.73133 7.11197 7.17906 7.60117 7.61690 7.87134 8.22546 8.37428 8.77228 9.26642 10.72110 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.007685 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.823254 B = 3642.503132 C = 4350.498561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.518 4.518 8 H 0.075 0.925 9 C 0.215 3.785 10 H 0.040 0.960 11 C -0.025 4.025 12 Cl -0.248 7.248 13 O -0.375 6.375 14 C 0.126 3.874 15 C -0.013 4.013 16 C -0.007 4.007 17 N -0.498 5.498 18 C 0.168 3.832 19 N -0.569 5.569 20 H 0.416 0.584 21 H 0.269 0.731 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.175 0.825 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -9.566 0.709 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.158 3.842 10 H 0.058 0.942 11 C -0.088 4.088 12 Cl -0.223 7.223 13 O -0.294 6.294 14 C 0.047 3.953 15 C -0.128 4.128 16 C -0.153 4.153 17 N -0.218 5.218 18 C -0.115 4.115 19 N -0.174 5.174 20 H 0.253 0.747 21 H 0.079 0.921 22 H 0.128 0.872 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.192 0.808 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.896 -9.653 0.526 9.709 hybrid contribution -1.288 0.753 0.230 1.510 sum -0.392 -8.901 0.756 8.941 Atomic orbital electron populations 1.69952 1.06031 1.27863 1.48414 1.24996 0.95014 0.99727 0.94226 0.86333 0.79778 0.81772 0.78667 1.20142 1.21036 1.19435 1.20998 0.95552 0.88645 1.50421 0.90684 1.20039 0.89749 0.84192 0.90212 0.94233 1.25828 0.93904 0.86025 1.03006 1.98605 1.74942 1.50648 1.98083 1.87826 1.36465 1.19186 1.85888 1.20701 0.91400 0.84472 0.98699 1.21210 0.98297 0.86308 1.07009 1.22149 0.90862 0.96472 1.05866 1.70264 1.32269 1.01935 1.17334 1.24851 0.80588 0.99974 1.06102 1.43058 1.11599 1.10643 1.52148 0.74705 0.92112 0.87216 0.90418 0.90832 0.93298 0.80761 0.77935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 12.17 55.43 0.67 -22.74 15 2 C 0.06 1.64 5.14 -17.83 -0.09 1.55 15 3 Si 0.91 20.05 29.55 -169.99 -5.02 15.02 15 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.52 -13.52 8.81 -34.44 -0.30 -13.82 15 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 15 9 C 0.21 5.14 2.23 -27.88 -0.06 5.08 15 10 H 0.04 1.02 7.73 -51.93 -0.40 0.62 15 11 C -0.02 -0.55 6.23 37.16 0.23 -0.32 15 12 Cl -0.25 -4.87 26.16 -51.86 -1.36 -6.23 15 13 O -0.37 -8.35 9.29 -35.23 -0.33 -8.67 15 14 C 0.13 2.34 6.17 36.00 0.22 2.56 15 15 C -0.01 -0.23 7.21 -81.60 -0.59 -0.82 15 16 C -0.01 -0.12 11.22 -17.81 -0.20 -0.32 15 17 N -0.50 -8.60 11.25 -14.66 -0.16 -8.76 15 18 C 0.17 2.20 13.04 -90.37 -1.18 1.02 15 19 N -0.57 -7.38 6.15 -10.30 -0.06 -7.44 15 20 H 0.42 3.82 8.96 -40.82 -0.37 3.46 15 21 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 22 H 0.11 2.60 6.78 -51.93 -0.35 2.25 15 23 H 0.08 1.67 8.14 -51.93 -0.42 1.24 15 24 H 0.07 1.34 5.15 -51.93 -0.27 1.08 15 25 H 0.05 0.89 8.09 -51.93 -0.42 0.47 15 26 H 0.18 3.31 7.87 -52.49 -0.41 2.90 15 27 H 0.20 1.67 8.06 -52.48 -0.42 1.24 15 LS Contribution 252.87 15.07 3.81 3.81 Total: -1.00 -28.79 252.87 -7.03 -35.82 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -2.61 Total: 4.26 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.97 Total: -5.06 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.45 Total: -38.95 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.33 Total: -8.67 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: -4.87 SS G_CDS: -1.36 Total: -6.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.79 -7.03 -35.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222999673.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.195 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds