Wall clock time and date at job start Sun Mar 29 2020 21:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48505 * 109.47075 * 264.99405 * 3 2 1 5 5 H 1.48501 * 109.47322 * 24.99001 * 3 2 1 6 6 H 1.48501 * 109.47440 * 144.99782 * 3 2 1 7 7 C 1.37871 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00254 * 189.48930 * 7 2 1 9 9 C 1.50703 * 120.00106 * 9.48583 * 7 2 1 10 10 H 1.09002 * 109.47031 * 305.45959 * 9 7 2 11 11 C 1.53001 * 109.46914 * 65.45416 * 9 7 2 12 12 Cl 1.80301 * 109.47147 * 186.33457 * 11 9 7 13 13 O 1.42895 * 109.47612 * 185.45446 * 9 7 2 14 14 C 1.42899 * 114.00397 * 150.00088 * 13 9 7 15 15 C 1.50692 * 109.47458 * 180.02562 * 14 13 9 16 16 C 1.34677 * 126.59083 * 0.16095 * 15 14 13 17 17 N 1.34127 * 108.01848 * 180.28923 * 16 15 14 18 18 C 1.30496 * 109.25874 * 359.72825 * 17 16 15 19 19 N 1.35048 * 108.70185 * 0.02562 * 18 17 16 20 20 H 0.96994 * 126.39795 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00622 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47103 * 306.33850 * 11 9 7 23 23 H 1.08998 * 109.46984 * 66.33353 * 11 9 7 24 24 H 1.09002 * 109.46928 * 59.99549 * 14 13 9 25 25 H 1.09003 * 109.46977 * 300.00131 * 14 13 9 26 26 H 1.07998 * 125.98894 * 0.05759 * 16 15 14 27 27 H 1.08006 * 125.65355 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3975 2.6810 0.5915 6 1 3.4897 1.4732 0.8031 7 6 2.0045 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1537 9 6 1.2666 -2.4901 -0.2162 10 1 0.4564 -2.5719 0.5084 11 6 0.6887 -2.5184 -1.6326 12 17 -0.3481 -3.9803 -1.8297 13 8 2.1685 -3.5856 -0.0479 14 6 1.5498 -4.7787 0.4376 15 6 2.5880 -5.8620 0.5772 16 6 3.9016 -5.7555 0.3001 17 7 4.4759 -6.9414 0.5506 18 6 3.5693 -7.7771 0.9778 19 7 2.3776 -7.1426 1.0123 20 1 1.5302 -7.5243 1.2898 21 1 -0.4851 0.8400 0.0004 22 1 0.0896 -1.6230 -1.7985 23 1 1.5028 -2.5500 -2.3566 24 1 0.7804 -5.1004 -0.2642 25 1 1.0963 -4.5832 1.4094 26 1 4.4038 -4.8714 -0.0639 27 1 3.7429 -8.8059 1.2568 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222999673.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:49 Heat of formation + Delta-G solvation = -23.507293 kcal Electronic energy + Delta-G solvation = -13811.515313 eV Core-core repulsion = 11209.399246 eV Total energy + Delta-G solvation = -2602.116068 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.90281 -38.99912 -36.56571 -35.22883 -33.52576 -32.09871 -30.36722 -27.21337 -26.58978 -23.05319 -22.37850 -21.64988 -19.24716 -18.32126 -17.62707 -16.74200 -16.39923 -15.58721 -15.53554 -15.03408 -14.57039 -14.29009 -14.06439 -14.02053 -13.31506 -12.88641 -12.82829 -12.73066 -12.21505 -11.77920 -11.36166 -11.21868 -10.97447 -10.91788 -10.56868 -10.12171 -9.21675 -8.32579 -6.44008 1.11465 1.40837 1.45940 1.54527 1.58657 2.04621 2.23357 2.38388 3.00954 3.28161 3.83652 4.15652 4.35466 4.38659 4.45685 4.56598 4.64151 4.75385 4.84730 5.23938 5.30307 5.60617 5.77550 5.94414 6.44373 6.62140 6.80281 7.14723 7.27787 8.75502 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.007685 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.823254 B = 3642.503132 C = 4350.498561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.221 3.779 10 H 0.017 0.983 11 C -0.017 4.017 12 Cl -0.223 7.223 13 O -0.389 6.389 14 C 0.128 3.872 15 C -0.027 4.027 16 C -0.031 4.031 17 N -0.538 5.538 18 C 0.198 3.802 19 N -0.553 5.553 20 H 0.436 0.564 21 H 0.273 0.727 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.154 0.846 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -10.805 0.915 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.164 3.836 10 H 0.034 0.966 11 C -0.080 4.080 12 Cl -0.197 7.197 13 O -0.308 6.308 14 C 0.050 3.950 15 C -0.143 4.143 16 C -0.177 4.177 17 N -0.258 5.258 18 C -0.085 4.085 19 N -0.160 5.160 20 H 0.277 0.723 21 H 0.082 0.918 22 H 0.112 0.888 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.172 0.828 27 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.772 -10.911 0.736 10.963 hybrid contribution -1.279 0.969 0.207 1.618 sum -0.507 -9.942 0.943 10.000 Atomic orbital electron populations 1.70024 1.07107 1.28759 1.48661 1.25680 0.95724 1.02450 0.93507 0.85416 0.78488 0.78047 0.78891 1.19340 1.20413 1.19515 1.21219 0.95238 0.90234 1.51469 0.91893 1.19782 0.88988 0.84292 0.90506 0.96573 1.25419 0.94076 0.86501 1.01976 1.98598 1.74149 1.49012 1.97989 1.87796 1.36756 1.20022 1.86229 1.20712 0.91952 0.83642 0.98668 1.20875 0.97325 0.87651 1.08467 1.22019 0.91643 0.96908 1.07155 1.70238 1.33905 1.02044 1.19599 1.25889 0.79402 1.01056 1.02197 1.42976 1.12836 1.08987 1.51206 0.72299 0.91805 0.88823 0.89966 0.90426 0.93152 0.82802 0.72631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.28 12.17 21.44 0.26 -48.02 15 2 C 0.03 1.44 5.14 84.65 0.44 1.88 15 3 Si 0.97 41.04 29.55 68.60 2.03 43.07 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 5 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 7 C -0.54 -28.92 8.81 25.60 0.23 -28.70 15 8 H 0.06 3.42 7.83 -2.91 -0.02 3.40 15 9 C 0.22 10.81 2.23 29.85 0.07 10.88 15 10 H 0.02 0.87 7.73 -2.39 -0.02 0.85 15 11 C -0.02 -0.74 6.23 71.98 0.45 -0.29 15 12 Cl -0.22 -8.58 26.16 -2.72 -0.07 -8.65 15 13 O -0.39 -17.68 9.29 -148.98 -1.38 -19.06 15 14 C 0.13 4.76 6.17 71.23 0.44 5.20 15 15 C -0.03 -0.91 7.21 40.95 0.30 -0.62 15 16 C -0.03 -1.14 11.22 83.53 0.94 -0.21 15 17 N -0.54 -17.81 11.25 -200.30 -2.25 -20.06 15 18 C 0.20 4.53 13.04 180.26 2.35 6.88 15 19 N -0.55 -12.84 6.15 -186.49 -1.15 -13.99 15 20 H 0.44 6.53 8.96 -92.71 -0.83 5.69 15 21 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 22 H 0.09 4.49 6.78 -2.39 -0.02 4.47 15 23 H 0.08 3.55 8.14 -2.39 -0.02 3.53 15 24 H 0.08 2.78 5.15 -2.39 -0.01 2.77 15 25 H 0.05 1.83 8.09 -2.39 -0.02 1.81 15 26 H 0.15 6.16 7.87 -2.91 -0.02 6.14 15 27 H 0.26 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -62.20 252.87 3.00 -59.21 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.36 Total: 12.49 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.20 Total: -4.98 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.14 Total: -82.07 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.38 Total: -19.06 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -8.58 SS G_CDS: -0.07 Total: -8.65 kcal Total: -62.20 3.00 -59.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222999673.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.699 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds