Wall clock time and date at job start Sun Mar 29 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48500 * 109.46934 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46871 * 119.99993 * 3 2 1 6 6 H 1.48495 * 109.46861 * 239.99850 * 3 2 1 7 7 C 1.37878 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00062 * 17.00320 * 7 2 1 9 9 C 1.50699 * 120.00183 * 196.99527 * 7 2 1 10 10 H 1.08995 * 109.47013 * 305.56175 * 9 7 2 11 11 C 1.53008 * 109.46765 * 65.56004 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14780 * 11 9 7 13 13 O 1.42893 * 109.47312 * 185.55975 * 9 7 2 14 14 C 1.42901 * 114.00456 * 150.00670 * 13 9 7 15 15 C 1.50696 * 109.47286 * 180.02562 * 14 13 9 16 16 C 1.41381 * 126.57992 * 90.00154 * 15 14 13 17 17 C 1.34519 * 106.84179 * 179.97438 * 16 15 14 18 18 O 1.34309 * 108.41435 * 359.97438 * 17 16 15 19 19 C 1.34300 * 109.48146 * 359.77029 * 18 17 16 20 20 H 0.97003 * 119.99765 * 174.95384 * 1 2 3 21 21 H 1.08998 * 109.46796 * 306.14662 * 11 9 7 22 22 H 1.09002 * 109.47099 * 66.14606 * 11 9 7 23 23 H 1.09003 * 109.46287 * 299.99732 * 14 13 9 24 24 H 1.08991 * 109.47120 * 59.99330 * 14 13 9 25 25 H 1.07994 * 126.58294 * 359.91565 * 16 15 14 26 26 H 1.07993 * 125.79396 * 180.02562 * 17 16 15 27 27 H 1.08002 * 125.79392 * 180.23202 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.5000 -2.1091 -0.2726 9 6 3.4622 -1.2224 0.3820 10 1 4.0139 -0.5163 -0.2385 11 6 3.6117 -0.8330 1.8541 12 17 5.3619 -0.6909 2.2634 13 8 3.9813 -2.5387 0.1824 14 6 5.3704 -2.5713 -0.1514 15 6 5.8086 -4.0009 -0.3388 16 6 5.7902 -4.7364 -1.5462 17 6 6.2643 -5.9629 -1.2626 18 8 6.5676 -6.0087 0.0450 19 6 6.2984 -4.8200 0.6091 20 1 -0.4850 -0.8368 -0.0739 21 1 3.1189 0.1234 2.0288 22 1 3.1529 -1.5979 2.4807 23 1 5.5350 -2.0171 -1.0754 24 1 5.9481 -2.1163 0.6530 25 1 5.4583 -4.3819 -2.5108 26 1 6.3819 -6.7730 -1.9670 27 1 6.4470 -4.5658 1.6482 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223786348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:53 Heat of formation + Delta-G solvation = -45.931027 kcal Electronic energy + Delta-G solvation = -13847.820251 eV Core-core repulsion = 11212.439066 eV Total energy + Delta-G solvation = -2635.381185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.050 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.31557 -37.43052 -35.10814 -33.65768 -32.71327 -30.18131 -29.28284 -25.70190 -24.68038 -21.37488 -20.75298 -20.21235 -17.88345 -17.16000 -16.07688 -15.56235 -14.90801 -14.61375 -14.13628 -13.61224 -12.99557 -12.70468 -12.61605 -12.57988 -12.32384 -11.36972 -11.30281 -10.87357 -10.65305 -10.21997 -10.01750 -9.57867 -9.49736 -9.27182 -8.49278 -8.41434 -8.29407 -6.74139 -4.36271 1.95049 2.76825 3.02255 3.21735 3.29304 3.31204 3.43824 4.24696 4.76789 4.97913 5.03448 5.22399 5.44644 5.76863 5.91912 5.96684 6.06300 6.08638 6.21699 6.31076 6.43882 6.69529 6.83743 7.30554 7.57709 8.07647 8.24032 8.79591 9.33242 10.66912 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.008033 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.776944 B = 3484.959374 C = 4017.451945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.035 3.965 3 Si 1.034 2.966 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.600 4.600 8 H 0.072 0.928 9 C 0.194 3.806 10 H 0.023 0.977 11 C -0.047 4.047 12 Cl -0.240 7.240 13 O -0.368 6.368 14 C 0.111 3.889 15 C -0.168 4.168 16 C -0.195 4.195 17 C -0.056 4.056 18 O -0.182 6.182 19 C -0.028 4.028 20 H 0.274 0.726 21 H 0.097 0.903 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.200 0.800 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 -5.327 0.252 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.861 3.139 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.637 4.637 8 H 0.090 0.910 9 C 0.136 3.864 10 H 0.041 0.959 11 C -0.109 4.109 12 Cl -0.214 7.214 13 O -0.288 6.288 14 C 0.034 3.966 15 C -0.170 4.170 16 C -0.214 4.214 17 C -0.123 4.123 18 O -0.078 6.078 19 C -0.096 4.096 20 H 0.084 0.916 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.216 0.784 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.693 -4.083 0.511 12.396 hybrid contribution 0.182 -1.309 -0.195 1.336 sum 11.875 -5.392 0.316 13.046 Atomic orbital electron populations 1.70849 1.06613 1.31382 1.43136 1.25793 0.96220 1.02157 0.93054 0.84179 0.75763 0.76012 0.77940 1.20187 1.19671 1.20182 1.21946 0.93124 0.97137 1.51512 0.91031 1.20284 0.96006 0.81605 0.88522 0.95924 1.26542 0.77208 1.04648 1.02512 1.98620 1.29011 1.98627 1.95185 1.87994 1.21174 1.29427 1.90174 1.20977 0.85469 0.90287 0.99870 1.20400 1.04954 0.98121 0.93479 1.21803 1.05371 0.94345 0.99869 1.23909 1.05550 0.99777 0.83101 1.84032 1.67195 1.34353 1.22201 1.23899 1.03977 0.82635 0.99066 0.91585 0.88449 0.89144 0.93539 0.91223 0.83545 0.78375 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.70 55.43 0.76 -25.20 15 2 C 0.04 0.96 5.30 -17.82 -0.09 0.87 15 3 Si 1.03 23.55 26.28 -169.99 -4.47 19.08 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 5 H -0.27 -5.63 5.72 56.52 0.32 -5.30 15 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.60 -16.57 9.15 -34.44 -0.32 -16.89 15 8 H 0.07 2.18 8.06 -52.48 -0.42 1.76 15 9 C 0.19 4.62 1.95 -27.88 -0.05 4.56 15 10 H 0.02 0.54 6.45 -51.93 -0.34 0.21 15 11 C -0.05 -1.00 6.00 37.16 0.22 -0.77 15 12 Cl -0.24 -4.46 26.15 -51.86 -1.36 -5.82 15 13 O -0.37 -8.55 9.94 -35.23 -0.35 -8.91 15 14 C 0.11 2.12 6.06 36.00 0.22 2.33 15 15 C -0.17 -2.90 5.79 -104.75 -0.61 -3.50 15 16 C -0.19 -2.99 10.87 -39.70 -0.43 -3.42 15 17 C -0.06 -0.73 12.09 29.42 0.36 -0.38 15 18 O -0.18 -2.64 10.65 5.70 0.06 -2.57 15 19 C -0.03 -0.43 12.01 29.42 0.35 -0.07 15 20 H 0.27 8.00 8.73 -40.82 -0.36 7.64 15 21 H 0.10 2.11 4.81 -51.93 -0.25 1.86 15 22 H 0.09 1.92 8.14 -51.93 -0.42 1.49 15 23 H 0.05 0.87 8.09 -51.93 -0.42 0.45 15 24 H 0.07 1.26 5.14 -51.93 -0.27 0.99 15 25 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 26 H 0.20 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.20 2.51 8.06 -52.49 -0.42 2.09 15 LS Contribution 249.47 15.07 3.76 3.76 Total: -1.00 -29.77 249.47 -4.56 -34.33 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.62 Total: 2.59 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.35 Total: -17.26 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.76 Total: -25.20 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.29 Total: -11.48 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.47 Total: 19.08 kcal Atomic # 17 Polarization: -4.46 SS G_CDS: -1.36 Total: -5.82 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.77 -4.56 -34.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223786348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.598 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds