Wall clock time and date at job start Sun Mar 29 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48500 * 109.46934 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46871 * 119.99993 * 3 2 1 6 6 H 1.48495 * 109.46861 * 239.99850 * 3 2 1 7 7 C 1.37878 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00062 * 17.00320 * 7 2 1 9 9 C 1.50699 * 120.00183 * 196.99527 * 7 2 1 10 10 H 1.08995 * 109.47013 * 305.56175 * 9 7 2 11 11 C 1.53008 * 109.46765 * 65.56004 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14780 * 11 9 7 13 13 O 1.42893 * 109.47312 * 185.55975 * 9 7 2 14 14 C 1.42901 * 114.00456 * 150.00670 * 13 9 7 15 15 C 1.50696 * 109.47286 * 180.02562 * 14 13 9 16 16 C 1.41381 * 126.57992 * 90.00154 * 15 14 13 17 17 C 1.34519 * 106.84179 * 179.97438 * 16 15 14 18 18 O 1.34309 * 108.41435 * 359.97438 * 17 16 15 19 19 C 1.34300 * 109.48146 * 359.77029 * 18 17 16 20 20 H 0.97003 * 119.99765 * 174.95384 * 1 2 3 21 21 H 1.08998 * 109.46796 * 306.14662 * 11 9 7 22 22 H 1.09002 * 109.47099 * 66.14606 * 11 9 7 23 23 H 1.09003 * 109.46287 * 299.99732 * 14 13 9 24 24 H 1.08991 * 109.47120 * 59.99330 * 14 13 9 25 25 H 1.07994 * 126.58294 * 359.91565 * 16 15 14 26 26 H 1.07993 * 125.79396 * 180.02562 * 17 16 15 27 27 H 1.08002 * 125.79392 * 180.23202 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.5000 -2.1091 -0.2726 9 6 3.4622 -1.2224 0.3820 10 1 4.0139 -0.5163 -0.2385 11 6 3.6117 -0.8330 1.8541 12 17 5.3619 -0.6909 2.2634 13 8 3.9813 -2.5387 0.1824 14 6 5.3704 -2.5713 -0.1514 15 6 5.8086 -4.0009 -0.3388 16 6 5.7902 -4.7364 -1.5462 17 6 6.2643 -5.9629 -1.2626 18 8 6.5676 -6.0087 0.0450 19 6 6.2984 -4.8200 0.6091 20 1 -0.4850 -0.8368 -0.0739 21 1 3.1189 0.1234 2.0288 22 1 3.1529 -1.5979 2.4807 23 1 5.5350 -2.0171 -1.0754 24 1 5.9481 -2.1163 0.6530 25 1 5.4583 -4.3819 -2.5108 26 1 6.3819 -6.7730 -1.9670 27 1 6.4470 -4.5658 1.6482 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223786348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:53 Heat of formation + Delta-G solvation = -65.585923 kcal Electronic energy + Delta-G solvation = -13848.672551 eV Core-core repulsion = 11212.439066 eV Total energy + Delta-G solvation = -2636.233485 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.45435 -39.17571 -36.72665 -35.45148 -34.26802 -31.87209 -30.60310 -27.17981 -26.63162 -22.66317 -22.48639 -21.44283 -19.86108 -18.45305 -17.73569 -16.83607 -16.48630 -16.08533 -15.61421 -15.28039 -14.65501 -14.54686 -14.21218 -13.97966 -13.70442 -12.92143 -12.82723 -12.66393 -12.38412 -11.86109 -11.75301 -11.33453 -11.15643 -10.76939 -10.55952 -10.06523 -9.51069 -8.93819 -6.58792 0.82379 1.31054 1.43547 1.48791 1.55054 1.67078 2.25109 2.35902 2.89362 3.23282 3.90139 3.98582 4.12328 4.15275 4.31417 4.41733 4.55402 4.61775 4.79624 5.03325 5.13777 5.26173 5.50430 5.55777 5.86359 6.15909 6.23326 6.69342 7.22231 8.45591 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.008033 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.776944 B = 3484.959374 C = 4017.451945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 1.070 2.930 4 H -0.277 1.277 5 H -0.235 1.235 6 H -0.259 1.259 7 C -0.613 4.613 8 H 0.024 0.976 9 C 0.197 3.803 10 H 0.030 0.970 11 C -0.043 4.043 12 Cl -0.206 7.206 13 O -0.393 6.393 14 C 0.111 3.889 15 C -0.205 4.205 16 C -0.227 4.227 17 C -0.035 4.035 18 O -0.183 6.183 19 C -0.023 4.023 20 H 0.258 0.742 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.244 0.756 27 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.156 -5.203 0.731 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.206 4.206 3 Si 0.889 3.111 4 H -0.202 1.202 5 H -0.159 1.159 6 H -0.184 1.184 7 C -0.650 4.650 8 H 0.042 0.958 9 C 0.139 3.861 10 H 0.047 0.953 11 C -0.105 4.105 12 Cl -0.180 7.180 13 O -0.313 6.313 14 C 0.035 3.965 15 C -0.206 4.206 16 C -0.246 4.246 17 C -0.101 4.101 18 O -0.078 6.078 19 C -0.091 4.091 20 H 0.067 0.933 21 H 0.117 0.883 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.168 0.832 26 H 0.260 0.740 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 14.066 -3.993 0.996 14.656 hybrid contribution -0.481 -1.500 -0.386 1.622 sum 13.585 -5.494 0.610 14.667 Atomic orbital electron populations 1.70974 1.07861 1.30463 1.45678 1.27223 0.96054 1.05714 0.91625 0.83786 0.75439 0.71731 0.80190 1.20169 1.15929 1.18354 1.22043 0.95441 0.95558 1.51955 0.95798 1.20059 0.93612 0.82307 0.90096 0.95258 1.26011 0.79278 1.04586 1.00668 1.98618 1.26016 1.98558 1.94843 1.87957 1.23873 1.29034 1.90445 1.21076 0.83309 0.92094 1.00041 1.20484 1.07076 0.97847 0.95217 1.22024 1.07249 0.95538 0.99794 1.24694 1.02703 0.99924 0.82821 1.84067 1.66930 1.33914 1.22923 1.24262 1.02763 0.82355 0.99701 0.93271 0.88287 0.89365 0.93717 0.90173 0.83216 0.73969 0.75989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.10 13.70 21.45 0.29 -54.81 15 2 C -0.01 -0.30 5.30 84.65 0.45 0.15 15 3 Si 1.07 46.08 26.28 68.60 1.80 47.88 15 4 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 5 H -0.24 -8.77 5.72 99.48 0.57 -8.20 15 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 7 C -0.61 -34.77 9.15 25.60 0.23 -34.53 15 8 H 0.02 1.54 8.06 -2.91 -0.02 1.51 15 9 C 0.20 9.32 1.95 29.85 0.06 9.38 15 10 H 0.03 1.35 6.45 -2.39 -0.02 1.34 15 11 C -0.04 -1.75 6.00 71.98 0.43 -1.32 15 12 Cl -0.21 -7.07 26.15 -2.72 -0.07 -7.14 15 13 O -0.39 -18.29 9.94 -148.98 -1.48 -19.77 15 14 C 0.11 4.14 6.06 71.23 0.43 4.57 15 15 C -0.20 -6.83 5.79 -19.94 -0.12 -6.95 15 16 C -0.23 -6.69 10.87 22.19 0.24 -6.45 15 17 C -0.03 -0.81 12.09 66.97 0.81 0.00 15 18 O -0.18 -4.82 10.65 -2.51 -0.03 -4.84 15 19 C -0.02 -0.65 12.01 66.97 0.80 0.15 15 20 H 0.26 15.85 8.73 -92.71 -0.81 15.04 15 21 H 0.10 4.05 4.81 -2.39 -0.01 4.04 15 22 H 0.09 3.66 8.14 -2.39 -0.02 3.64 15 23 H 0.04 1.65 8.09 -2.39 -0.02 1.63 15 24 H 0.08 2.75 5.14 -2.39 -0.01 2.74 15 25 H 0.15 4.15 8.06 -2.91 -0.02 4.13 15 26 H 0.24 3.16 8.06 -2.91 -0.02 3.14 15 27 H 0.22 5.01 8.06 -2.91 -0.02 4.99 15 Total: -1.00 -65.46 249.47 4.86 -60.60 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.00 Total: 13.08 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.34 Total: -35.01 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.29 Total: -54.81 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.51 Total: -24.61 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.80 Total: 47.88 kcal Atomic # 17 Polarization: -7.07 SS G_CDS: -0.07 Total: -7.14 kcal Total: -65.46 4.86 -60.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223786348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.985 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds