Wall clock time and date at job start Sun Mar 29 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 108.17986 * 3 2 1 5 5 O 1.42898 * 109.47150 * 220.73878 * 4 3 2 6 6 C 1.42907 * 114.00040 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46706 * 30.00243 * 6 5 4 8 8 C 1.50705 * 109.46859 * 270.00171 * 6 5 4 9 9 H 1.07996 * 120.00315 * 299.79672 * 8 6 5 10 10 C 1.37877 * 119.99438 * 119.79297 * 8 6 5 11 11 N 1.31515 * 119.99636 * 187.31578 * 10 8 6 12 12 Si 1.86805 * 120.00507 * 7.31886 * 10 8 6 13 13 H 1.48493 * 109.47123 * 274.98544 * 12 10 8 14 14 H 1.48507 * 109.46564 * 34.98343 * 12 10 8 15 15 H 1.48498 * 109.47252 * 154.98191 * 12 10 8 16 16 C 1.50697 * 109.46983 * 150.00581 * 6 5 4 17 17 C 1.38227 * 120.00302 * 38.53987 * 16 6 5 18 18 C 1.38237 * 119.99981 * 179.78955 * 17 16 6 19 19 C 1.38233 * 119.99927 * 0.44033 * 18 17 16 20 20 C 1.38233 * 119.99964 * 359.81409 * 19 18 17 21 21 C 1.38230 * 120.00011 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.46711 * 211.07681 * 1 2 3 23 23 H 1.08999 * 109.47483 * 331.07918 * 1 2 3 24 24 H 1.09000 * 109.46894 * 91.08013 * 1 2 3 25 25 H 1.09009 * 109.46922 * 100.74201 * 4 3 2 26 26 H 1.08994 * 109.47243 * 340.74544 * 4 3 2 27 27 H 0.97001 * 120.00177 * 179.97438 * 11 10 8 28 28 H 1.08000 * 119.99979 * 359.97438 * 17 16 6 29 29 H 1.08003 * 120.00172 * 180.27146 * 18 17 16 30 30 H 1.08004 * 120.00230 * 179.83553 * 19 18 17 31 31 H 1.08001 * 119.99703 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.00029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0014 -0.0006 5 8 4.5941 1.0225 0.8784 6 6 6.0187 1.1092 0.9510 7 1 6.4507 0.7946 0.0010 8 6 6.5210 0.2122 2.0529 9 1 6.2002 0.3759 3.0711 10 6 7.3902 -0.8176 1.7612 11 7 7.7158 -1.6870 2.6926 12 14 8.1053 -0.9779 0.0429 13 1 7.1559 -1.7248 -0.8207 14 1 8.3333 0.3747 -0.5264 15 1 9.3952 -1.7106 0.1099 16 6 6.4212 2.5325 1.2392 17 6 5.6756 3.2977 2.1162 18 6 6.0474 4.6019 2.3838 19 6 7.1597 5.1439 1.7674 20 6 7.9023 4.3803 0.8863 21 6 7.5331 3.0748 0.6221 22 1 -0.3632 -0.8802 0.5305 23 1 -0.3634 0.8995 0.4970 24 1 -0.3633 -0.0194 -1.0275 25 1 4.4808 0.1932 -1.0105 26 1 4.4821 -0.9685 0.3381 27 1 8.3270 -2.4117 2.4873 28 1 4.8042 2.8756 2.5946 29 1 5.4673 5.1984 3.0724 30 1 7.4487 6.1637 1.9745 31 1 8.7716 4.8037 0.4051 32 1 8.1131 2.4784 -0.0666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224359574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:51 Heat of formation + Delta-G solvation = 23.428023 kcal Electronic energy + Delta-G solvation = -15075.192715 eV Core-core repulsion = 12581.085109 eV Total energy + Delta-G solvation = -2494.107607 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70483 -36.86394 -33.88436 -32.75530 -31.22430 -30.22743 -29.06706 -27.12229 -25.15437 -22.80289 -21.85865 -20.16830 -17.34833 -16.70308 -16.06680 -15.66015 -14.92788 -14.48506 -14.17666 -13.79004 -13.54876 -13.36995 -13.26337 -12.82310 -12.70181 -12.31478 -12.07566 -11.61978 -11.10273 -10.94553 -10.79574 -10.43686 -9.90440 -9.77767 -9.51388 -9.34124 -8.82381 -8.51073 -8.25256 -7.83728 -6.30747 -4.32998 2.05479 2.09637 2.92344 3.09377 3.10348 3.17378 3.20831 4.17933 4.38812 4.55253 4.98451 5.17370 5.49890 5.55584 5.62146 5.65841 5.71075 5.76750 5.91706 5.99988 6.12625 6.22146 6.26790 6.29008 6.47129 6.68527 6.75550 7.10285 7.19190 7.34716 7.43435 7.69837 7.99373 8.12102 8.38411 8.83370 9.29931 10.81424 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.010420 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.197329 B = 2686.530116 C = 4020.752943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.205 4.205 3 C -0.157 4.157 4 C 0.177 3.823 5 O -0.388 6.388 6 C 0.212 3.788 7 H 0.034 0.966 8 C -0.523 4.523 9 H 0.083 0.917 10 C 0.079 3.921 11 N -0.878 5.878 12 Si 0.864 3.136 13 H -0.270 1.270 14 H -0.261 1.261 15 H -0.281 1.281 16 C -0.033 4.033 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.145 4.145 20 C -0.124 4.124 21 C -0.127 4.127 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.269 0.731 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 6.752 -6.055 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.205 4.205 3 C -0.157 4.157 4 C 0.101 3.899 5 O -0.308 6.308 6 C 0.157 3.843 7 H 0.052 0.948 8 C -0.560 4.560 9 H 0.101 0.899 10 C -0.125 4.125 11 N -0.515 5.515 12 Si 0.690 3.310 13 H -0.195 1.195 14 H -0.186 1.186 15 H -0.206 1.206 16 C -0.034 4.034 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.163 4.163 20 C -0.142 4.142 21 C -0.145 4.145 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.656 6.699 -5.899 10.566 hybrid contribution 0.787 -0.445 -0.854 1.244 sum -4.868 6.253 -6.753 10.412 Atomic orbital electron populations 1.18764 0.84815 1.02788 1.02431 1.22274 0.93753 1.02188 1.02334 1.22276 0.93325 1.00133 1.00010 1.18885 0.83168 0.94274 0.93573 1.87910 1.24538 1.53503 1.64871 1.19094 0.78705 0.89986 0.96549 0.94798 1.21287 1.27455 1.11608 0.95641 0.89885 1.25120 0.95725 0.94672 0.97022 1.69895 1.33870 1.14086 1.33645 0.87079 0.79779 0.78970 0.85147 1.19546 1.18575 1.20634 1.20118 0.94093 0.94736 0.94431 1.20965 0.99782 0.93329 0.97708 1.21061 0.97404 0.95833 1.00159 1.20900 0.96874 0.99344 0.99230 1.20928 0.99611 0.94459 0.99211 1.20961 0.97604 0.95087 1.00872 0.90570 0.90345 0.90722 0.92551 0.90574 0.92101 0.85987 0.86990 0.87174 0.86979 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.37 10.32 34.37 0.35 -0.01 16 2 C -0.21 -3.50 14.13 -37.12 -0.52 -4.03 16 3 C -0.16 -3.09 13.73 -37.12 -0.51 -3.60 16 4 C 0.18 3.69 6.21 34.37 0.21 3.91 16 5 O -0.39 -9.16 9.20 -35.23 -0.32 -9.48 16 6 C 0.21 5.12 2.28 -29.03 -0.07 5.05 16 7 H 0.03 0.80 4.29 -51.93 -0.22 0.58 16 8 C -0.52 -14.53 9.16 -34.44 -0.32 -14.85 16 9 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 11 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 12 Si 0.86 20.13 26.96 -169.99 -4.58 15.54 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.26 -5.72 5.90 56.52 0.33 -5.39 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C -0.03 -0.74 4.96 -104.63 -0.52 -1.26 16 17 C -0.10 -2.07 9.36 -39.59 -0.37 -2.44 16 18 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 19 C -0.15 -2.39 10.05 -39.59 -0.40 -2.79 16 20 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 21 C -0.13 -2.57 9.67 -39.58 -0.38 -2.95 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.06 8.09 -51.92 -0.42 0.64 16 26 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.12 2.57 7.73 -52.49 -0.41 2.17 16 29 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.11 2.25 7.16 -52.49 -0.38 1.87 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -30.58 286.04 -7.24 -37.82 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.01 Total: 2.92 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.41 Total: -26.03 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.77 Total: -25.08 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.32 Total: -9.48 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.58 Total: 15.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.58 -7.24 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224359574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.247 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds