Wall clock time and date at job start Sun Mar 29 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 108.17986 * 3 2 1 5 5 O 1.42898 * 109.47150 * 220.73878 * 4 3 2 6 6 C 1.42907 * 114.00040 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46706 * 30.00243 * 6 5 4 8 8 C 1.50705 * 109.46859 * 270.00171 * 6 5 4 9 9 H 1.07996 * 120.00315 * 299.79672 * 8 6 5 10 10 C 1.37877 * 119.99438 * 119.79297 * 8 6 5 11 11 N 1.31515 * 119.99636 * 187.31578 * 10 8 6 12 12 Si 1.86805 * 120.00507 * 7.31886 * 10 8 6 13 13 H 1.48493 * 109.47123 * 274.98544 * 12 10 8 14 14 H 1.48507 * 109.46564 * 34.98343 * 12 10 8 15 15 H 1.48498 * 109.47252 * 154.98191 * 12 10 8 16 16 C 1.50697 * 109.46983 * 150.00581 * 6 5 4 17 17 C 1.38227 * 120.00302 * 38.53987 * 16 6 5 18 18 C 1.38237 * 119.99981 * 179.78955 * 17 16 6 19 19 C 1.38233 * 119.99927 * 0.44033 * 18 17 16 20 20 C 1.38233 * 119.99964 * 359.81409 * 19 18 17 21 21 C 1.38230 * 120.00011 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.46711 * 211.07681 * 1 2 3 23 23 H 1.08999 * 109.47483 * 331.07918 * 1 2 3 24 24 H 1.09000 * 109.46894 * 91.08013 * 1 2 3 25 25 H 1.09009 * 109.46922 * 100.74201 * 4 3 2 26 26 H 1.08994 * 109.47243 * 340.74544 * 4 3 2 27 27 H 0.97001 * 120.00177 * 179.97438 * 11 10 8 28 28 H 1.08000 * 119.99979 * 359.97438 * 17 16 6 29 29 H 1.08003 * 120.00172 * 180.27146 * 18 17 16 30 30 H 1.08004 * 120.00230 * 179.83553 * 19 18 17 31 31 H 1.08001 * 119.99703 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.00029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0014 -0.0006 5 8 4.5941 1.0225 0.8784 6 6 6.0187 1.1092 0.9510 7 1 6.4507 0.7946 0.0010 8 6 6.5210 0.2122 2.0529 9 1 6.2002 0.3759 3.0711 10 6 7.3902 -0.8176 1.7612 11 7 7.7158 -1.6870 2.6926 12 14 8.1053 -0.9779 0.0429 13 1 7.1559 -1.7248 -0.8207 14 1 8.3333 0.3747 -0.5264 15 1 9.3952 -1.7106 0.1099 16 6 6.4212 2.5325 1.2392 17 6 5.6756 3.2977 2.1162 18 6 6.0474 4.6019 2.3838 19 6 7.1597 5.1439 1.7674 20 6 7.9023 4.3803 0.8863 21 6 7.5331 3.0748 0.6221 22 1 -0.3632 -0.8802 0.5305 23 1 -0.3634 0.8995 0.4970 24 1 -0.3633 -0.0194 -1.0275 25 1 4.4808 0.1932 -1.0105 26 1 4.4821 -0.9685 0.3381 27 1 8.3270 -2.4117 2.4873 28 1 4.8042 2.8756 2.5946 29 1 5.4673 5.1984 3.0724 30 1 7.4487 6.1637 1.9745 31 1 8.7716 4.8037 0.4051 32 1 8.1131 2.4784 -0.0666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224359574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:51 Heat of formation + Delta-G solvation = 5.397306 kcal Electronic energy + Delta-G solvation = -15075.974586 eV Core-core repulsion = 12581.085109 eV Total energy + Delta-G solvation = -2494.889477 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26623 -38.55586 -35.37030 -34.68235 -32.85547 -31.67523 -30.35397 -28.97868 -26.65144 -24.59412 -23.31990 -21.81142 -19.38689 -18.23852 -17.71510 -17.24838 -16.65611 -15.99032 -15.86992 -15.26944 -14.97323 -14.77697 -14.40894 -14.31943 -14.17140 -13.90699 -13.63478 -13.32743 -12.91584 -12.64449 -12.35558 -11.96167 -11.84104 -11.39839 -11.00147 -10.93618 -10.84091 -10.21729 -9.70795 -9.43711 -8.44512 -6.53962 0.58699 0.62808 1.24660 1.27401 1.37279 1.47910 1.67853 2.20399 2.78284 3.07621 3.12503 3.58181 4.07575 4.23560 4.25012 4.34522 4.38406 4.46135 4.56893 4.74548 4.81367 4.84300 4.84545 4.87520 5.06209 5.20725 5.27790 5.33764 5.67757 5.71424 5.86691 6.04394 6.24902 6.45920 6.58625 6.63898 7.14965 8.72127 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.010420 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.197329 B = 2686.530116 C = 4020.752943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.167 4.167 3 C -0.233 4.233 4 C 0.176 3.824 5 O -0.403 6.403 6 C 0.219 3.781 7 H 0.042 0.958 8 C -0.534 4.534 9 H 0.028 0.972 10 C 0.025 3.975 11 N -0.930 5.930 12 Si 0.926 3.074 13 H -0.255 1.255 14 H -0.236 1.236 15 H -0.274 1.274 16 C -0.071 4.071 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.143 4.143 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.273 0.727 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 9.014 -8.078 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.167 4.167 3 C -0.233 4.233 4 C 0.100 3.900 5 O -0.324 6.324 6 C 0.164 3.836 7 H 0.059 0.941 8 C -0.572 4.572 9 H 0.046 0.954 10 C -0.175 4.175 11 N -0.569 5.569 12 Si 0.748 3.252 13 H -0.179 1.179 14 H -0.160 1.160 15 H -0.200 1.200 16 C -0.071 4.071 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.135 4.135 21 C -0.161 4.161 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.160 0.840 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.972 8.978 -7.925 13.382 hybrid contribution 0.708 -1.057 -0.126 1.278 sum -5.264 7.921 -8.050 12.460 Atomic orbital electron populations 1.19198 0.80676 1.04608 1.04910 1.23542 0.95125 0.98889 0.99139 1.22315 0.93783 1.03649 1.03532 1.18899 0.84700 0.92526 0.93892 1.87866 1.24237 1.54258 1.66000 1.18938 0.78627 0.90903 0.95164 0.94076 1.21376 1.28058 1.13272 0.94459 0.95370 1.26014 0.95801 0.93790 1.01879 1.70046 1.35204 1.15157 1.36468 0.86075 0.79195 0.80408 0.79565 1.17889 1.15980 1.19959 1.20147 0.96022 0.94293 0.96655 1.20968 0.99767 0.95182 0.98399 1.21407 0.98102 0.94444 1.00232 1.21429 0.95274 1.01081 0.97285 1.21384 1.00437 0.93062 0.98663 1.21136 0.96978 0.96768 1.01247 0.88487 0.88424 0.87757 0.90559 0.92699 0.91817 0.88189 0.83991 0.82715 0.83110 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.75 10.32 70.18 0.72 -0.03 16 2 C -0.17 -5.52 14.13 31.13 0.44 -5.08 16 3 C -0.23 -9.36 13.73 31.13 0.43 -8.93 16 4 C 0.18 7.67 6.21 70.18 0.44 8.11 16 5 O -0.40 -20.12 9.20 -148.98 -1.37 -21.49 16 6 C 0.22 11.03 2.28 29.10 0.07 11.10 16 7 H 0.04 1.96 4.29 -2.39 -0.01 1.95 16 8 C -0.53 -31.72 9.16 25.60 0.23 -31.48 16 9 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 10 C 0.03 1.46 5.47 84.65 0.46 1.93 16 11 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 12 Si 0.93 41.98 26.96 68.60 1.85 43.83 16 13 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 14 H -0.24 -9.70 5.90 99.48 0.59 -9.12 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 C -0.07 -3.23 4.96 -19.87 -0.10 -3.33 16 17 C -0.12 -5.32 9.36 22.27 0.21 -5.11 16 18 C -0.12 -4.12 10.05 22.27 0.22 -3.90 16 19 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 20 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 21 C -0.14 -5.60 9.67 22.27 0.22 -5.39 16 22 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 2.92 8.09 -2.38 -0.02 2.90 16 26 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.10 4.54 7.73 -2.91 -0.02 4.52 16 29 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.12 4.40 7.16 -2.91 -0.02 4.38 16 Total: -1.00 -72.40 286.04 5.55 -66.85 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.99 Total: 17.31 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 3.79 Total: -49.13 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.30 Total: -57.36 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.37 Total: -21.49 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.85 Total: 43.83 kcal Total: -72.40 5.55 -66.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224359574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds