Wall clock time and date at job start Sun Mar 29 2020 22:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 209.78988 * 3 2 1 5 5 O 1.42899 * 109.47313 * 357.09870 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47259 * 330.00253 * 6 5 4 8 8 C 1.50699 * 109.46964 * 90.00040 * 6 5 4 9 9 H 1.07996 * 120.00370 * 239.99770 * 8 6 5 10 10 C 1.37882 * 119.99790 * 60.00152 * 8 6 5 11 11 N 1.31508 * 120.00257 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 119.99910 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47081 * 59.99441 * 12 10 8 14 14 H 1.48496 * 109.47319 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46734 * 299.99914 * 12 10 8 16 16 C 1.50703 * 109.47171 * 210.00101 * 6 5 4 17 17 C 1.38236 * 119.99787 * 324.72807 * 16 6 5 18 18 C 1.38241 * 119.99636 * 179.81278 * 17 16 6 19 19 C 1.38234 * 120.00115 * 0.39672 * 18 17 16 20 20 C 1.38240 * 119.99714 * 359.85290 * 19 18 17 21 21 C 1.38228 * 120.00011 * 145.00451 * 16 6 5 22 22 H 1.09006 * 109.47443 * 333.11230 * 1 2 3 23 23 H 1.09000 * 109.47279 * 93.11107 * 1 2 3 24 24 H 1.08997 * 109.47339 * 213.11463 * 1 2 3 25 25 H 1.09000 * 109.47069 * 237.09857 * 4 3 2 26 26 H 1.09007 * 109.46642 * 117.09882 * 4 3 2 27 27 H 0.97002 * 120.00075 * 180.02562 * 11 10 8 28 28 H 1.07996 * 120.00216 * 359.97438 * 17 16 6 29 29 H 1.08000 * 119.99857 * 180.22806 * 18 17 16 30 30 H 1.07998 * 120.00030 * 179.84064 * 19 18 17 31 31 H 1.08003 * 119.99655 * 179.97438 * 20 19 18 32 32 H 1.08004 * 120.00508 * 359.97379 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 8 4.5955 -1.3434 0.0686 6 6 6.0201 -1.4549 0.0741 7 1 6.4518 -0.6231 -0.4827 8 6 6.5210 -1.4219 1.4950 9 1 7.2034 -0.6460 1.8092 10 6 6.1083 -2.3825 2.3939 11 7 5.2771 -3.3271 2.0115 12 14 6.7287 -2.3413 4.1554 13 1 6.3295 -1.0599 4.7910 14 1 6.1403 -3.4741 4.9141 15 1 8.2092 -2.4567 4.1615 16 6 6.4247 -2.7552 -0.5713 17 6 5.6426 -3.8827 -0.4037 18 6 6.0117 -5.0746 -0.9989 19 6 7.1671 -5.1410 -1.7547 20 6 7.9519 -4.0147 -1.9180 21 6 7.5808 -2.8220 -1.3259 22 1 -0.3634 0.9166 0.4648 23 1 -0.3634 -0.0558 -1.0261 24 1 -0.3634 -0.8607 0.5614 25 1 4.4806 0.5603 0.8632 26 1 4.4811 0.4702 -0.9145 27 1 4.9864 -4.0027 2.6440 28 1 4.7418 -3.8318 0.1900 29 1 5.3987 -5.9545 -0.8710 30 1 7.4568 -6.0728 -2.2176 31 1 8.8549 -4.0667 -2.5082 32 1 8.1940 -1.9421 -1.4535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224359575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:53 Heat of formation + Delta-G solvation = 32.506185 kcal Electronic energy + Delta-G solvation = -15330.330211 eV Core-core repulsion = 12836.616263 eV Total energy + Delta-G solvation = -2493.713948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.25744 -36.46257 -33.75722 -32.66749 -30.54311 -29.64256 -28.82813 -26.72314 -24.90756 -22.77818 -21.30793 -20.12479 -16.78433 -16.49817 -15.68252 -15.19998 -14.67031 -14.20385 -14.05369 -13.43992 -13.34044 -13.24630 -13.14946 -12.52594 -12.15212 -12.01599 -11.48902 -11.11324 -10.92860 -10.86394 -10.35710 -10.20111 -9.90175 -9.56175 -9.22425 -9.16896 -8.72506 -8.10999 -7.72108 -7.41448 -5.94517 -4.29256 2.50197 2.66268 3.11136 3.24978 3.27169 3.31334 3.33354 4.33257 4.66881 5.03924 5.17397 5.47221 5.73594 5.78776 5.84756 5.87613 5.98615 6.08819 6.12040 6.35170 6.38433 6.42031 6.60802 6.83924 6.92912 7.14785 7.32915 7.54133 7.64713 7.86795 8.04774 8.08869 8.17218 8.34265 8.52522 8.92587 9.46439 10.89478 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.010114 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.869654 B = 2767.698107 C = 3788.772286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.215 4.215 3 C -0.150 4.150 4 C 0.177 3.823 5 O -0.363 6.363 6 C 0.244 3.756 7 H 0.021 0.979 8 C -0.548 4.548 9 H 0.062 0.938 10 C 0.084 3.916 11 N -0.845 5.845 12 Si 0.892 3.108 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.041 4.041 17 C -0.044 4.044 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.129 4.129 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.164 0.836 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 2.150 -4.435 5.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.215 4.215 3 C -0.150 4.150 4 C 0.100 3.900 5 O -0.283 6.283 6 C 0.189 3.811 7 H 0.039 0.961 8 C -0.585 4.585 9 H 0.080 0.920 10 C -0.122 4.122 11 N -0.480 5.480 12 Si 0.720 3.280 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.201 1.201 16 C -0.042 4.042 17 C -0.063 4.063 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.169 4.169 21 C -0.147 4.147 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.181 0.819 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.205 1.828 -4.345 5.700 hybrid contribution 0.727 0.025 1.122 1.338 sum -2.478 1.853 -3.223 4.468 Atomic orbital electron populations 1.18724 0.85051 1.02469 1.02360 1.22233 0.93760 1.01441 1.04084 1.22413 0.93514 1.00175 0.98926 1.18838 0.83013 0.88606 0.99539 1.88116 1.24342 1.21025 1.94812 1.18594 0.78344 0.89994 0.94198 0.96145 1.21406 1.29479 1.13010 0.94575 0.92031 1.25005 0.94006 0.94431 0.98756 1.69813 1.30747 1.13661 1.33771 0.86666 0.79177 0.77772 0.84430 1.20077 1.21041 1.20138 1.19969 0.93929 0.97309 0.93008 1.21888 1.01942 0.90243 0.92221 1.21156 0.97532 0.98513 1.00064 1.20819 0.96637 0.97343 1.01625 1.20695 0.99801 0.93616 1.02757 1.20780 0.97482 0.97253 0.99204 0.90889 0.90841 0.90460 0.91533 0.93137 0.92665 0.81863 0.88049 0.88289 0.88005 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.38 10.32 34.37 0.35 -0.02 16 2 C -0.21 -3.92 14.13 -37.13 -0.52 -4.45 16 3 C -0.15 -3.09 13.73 -37.12 -0.51 -3.60 16 4 C 0.18 3.72 6.21 34.37 0.21 3.94 16 5 O -0.36 -9.13 8.49 -35.23 -0.30 -9.43 16 6 C 0.24 6.08 2.59 -29.03 -0.08 6.01 16 7 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 8 C -0.55 -14.64 8.89 -34.44 -0.31 -14.94 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.08 2.26 5.24 -17.82 -0.09 2.17 16 11 N -0.85 -23.04 8.50 55.43 0.47 -22.57 16 12 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.04 -1.01 4.80 -104.62 -0.50 -1.52 16 17 C -0.04 -1.08 7.46 -39.58 -0.30 -1.38 16 18 C -0.15 -3.33 10.05 -39.58 -0.40 -3.72 16 19 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 20 C -0.15 -2.98 10.05 -39.58 -0.40 -3.37 16 21 C -0.13 -2.81 9.68 -39.59 -0.38 -3.19 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.05 0.94 8.09 -51.92 -0.42 0.52 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.16 4.37 5.50 -52.49 -0.29 4.08 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 30 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 283.25 15.07 4.27 4.27 Total: -1.00 -29.32 283.25 -7.93 -37.25 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.04 Total: 1.98 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.31 Total: -27.36 kcal Atomic # 7 Polarization: -23.04 SS G_CDS: 0.47 Total: -22.57 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.30 Total: -9.43 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.32 -7.93 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224359575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.753 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds