Wall clock time and date at job start Sun Mar 29 2020 22:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 209.78988 * 3 2 1 5 5 O 1.42899 * 109.47313 * 357.09870 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47259 * 330.00253 * 6 5 4 8 8 C 1.50699 * 109.46964 * 90.00040 * 6 5 4 9 9 H 1.07996 * 120.00370 * 239.99770 * 8 6 5 10 10 C 1.37882 * 119.99790 * 60.00152 * 8 6 5 11 11 N 1.31508 * 120.00257 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 119.99910 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47081 * 59.99441 * 12 10 8 14 14 H 1.48496 * 109.47319 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46734 * 299.99914 * 12 10 8 16 16 C 1.50703 * 109.47171 * 210.00101 * 6 5 4 17 17 C 1.38236 * 119.99787 * 324.72807 * 16 6 5 18 18 C 1.38241 * 119.99636 * 179.81278 * 17 16 6 19 19 C 1.38234 * 120.00115 * 0.39672 * 18 17 16 20 20 C 1.38240 * 119.99714 * 359.85290 * 19 18 17 21 21 C 1.38228 * 120.00011 * 145.00451 * 16 6 5 22 22 H 1.09006 * 109.47443 * 333.11230 * 1 2 3 23 23 H 1.09000 * 109.47279 * 93.11107 * 1 2 3 24 24 H 1.08997 * 109.47339 * 213.11463 * 1 2 3 25 25 H 1.09000 * 109.47069 * 237.09857 * 4 3 2 26 26 H 1.09007 * 109.46642 * 117.09882 * 4 3 2 27 27 H 0.97002 * 120.00075 * 180.02562 * 11 10 8 28 28 H 1.07996 * 120.00216 * 359.97438 * 17 16 6 29 29 H 1.08000 * 119.99857 * 180.22806 * 18 17 16 30 30 H 1.07998 * 120.00030 * 179.84064 * 19 18 17 31 31 H 1.08003 * 119.99655 * 179.97438 * 20 19 18 32 32 H 1.08004 * 120.00508 * 359.97379 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 8 4.5955 -1.3434 0.0686 6 6 6.0201 -1.4549 0.0741 7 1 6.4518 -0.6231 -0.4827 8 6 6.5210 -1.4219 1.4950 9 1 7.2034 -0.6460 1.8092 10 6 6.1083 -2.3825 2.3939 11 7 5.2771 -3.3271 2.0115 12 14 6.7287 -2.3413 4.1554 13 1 6.3295 -1.0599 4.7910 14 1 6.1403 -3.4741 4.9141 15 1 8.2092 -2.4567 4.1615 16 6 6.4247 -2.7552 -0.5713 17 6 5.6426 -3.8827 -0.4037 18 6 6.0117 -5.0746 -0.9989 19 6 7.1671 -5.1410 -1.7547 20 6 7.9519 -4.0147 -1.9180 21 6 7.5808 -2.8220 -1.3259 22 1 -0.3634 0.9166 0.4648 23 1 -0.3634 -0.0558 -1.0261 24 1 -0.3634 -0.8607 0.5614 25 1 4.4806 0.5603 0.8632 26 1 4.4811 0.4702 -0.9145 27 1 4.9864 -4.0027 2.6440 28 1 4.7418 -3.8318 0.1900 29 1 5.3987 -5.9545 -0.8710 30 1 7.4568 -6.0728 -2.2176 31 1 8.8549 -4.0667 -2.5082 32 1 8.1940 -1.9421 -1.4535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224359575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:53 Heat of formation + Delta-G solvation = 17.455735 kcal Electronic energy + Delta-G solvation = -15330.982848 eV Core-core repulsion = 12836.616263 eV Total energy + Delta-G solvation = -2494.366585 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97700 -38.21676 -35.31870 -34.46239 -32.27558 -31.30566 -30.20630 -28.59104 -26.45266 -24.63901 -22.97620 -21.87035 -18.73066 -18.07913 -17.32904 -16.92858 -16.55331 -15.90887 -15.68184 -15.05664 -14.90392 -14.50037 -14.31034 -14.13272 -13.79771 -13.67902 -13.22273 -12.97399 -12.78013 -12.68363 -12.10524 -11.97638 -11.59139 -11.18707 -10.87243 -10.75531 -10.66903 -9.89821 -9.41373 -9.17041 -7.91219 -6.35060 0.81894 0.99623 1.39486 1.39745 1.46900 1.60284 1.76306 2.38778 3.09332 3.29180 3.36852 3.83415 4.34407 4.38387 4.44785 4.56965 4.64558 4.65545 4.77989 4.83926 4.87899 4.89944 5.07622 5.15532 5.21763 5.47109 5.62078 5.67790 5.88170 6.03458 6.15159 6.34860 6.52265 6.61910 6.70589 7.04630 7.43684 8.88208 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.010114 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.869654 B = 2767.698107 C = 3788.772286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.185 4.185 3 C -0.222 4.222 4 C 0.176 3.824 5 O -0.387 6.387 6 C 0.241 3.759 7 H 0.026 0.974 8 C -0.569 4.569 9 H 0.057 0.943 10 C 0.041 3.959 11 N -0.861 5.861 12 Si 0.948 3.052 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.273 1.273 16 C -0.071 4.071 17 C -0.069 4.069 18 C -0.162 4.162 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.140 4.140 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.259 0.741 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 1.598 -5.192 6.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.186 4.186 3 C -0.223 4.223 4 C 0.099 3.901 5 O -0.308 6.308 6 C 0.185 3.815 7 H 0.044 0.956 8 C -0.606 4.606 9 H 0.075 0.925 10 C -0.163 4.163 11 N -0.496 5.496 12 Si 0.773 3.227 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.198 1.198 16 C -0.071 4.071 17 C -0.088 4.088 18 C -0.181 4.181 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.158 4.158 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.155 1.285 -5.111 6.142 hybrid contribution 0.626 0.211 1.270 1.431 sum -2.529 1.496 -3.841 4.836 Atomic orbital electron populations 1.19130 0.81034 1.04410 1.04569 1.23516 0.95240 0.98505 1.01293 1.22620 0.94211 1.03364 1.02057 1.18884 0.84055 0.87047 1.00066 1.88060 1.24440 1.23332 1.94948 1.18614 0.78314 0.90884 0.93640 0.95588 1.21668 1.29771 1.13121 0.96055 0.92474 1.25674 0.94376 0.94314 1.01973 1.70046 1.31360 1.13866 1.34328 0.85802 0.78672 0.77706 0.80520 1.19789 1.20790 1.19793 1.20108 0.95368 0.96983 0.94683 1.21670 1.01590 0.91862 0.93693 1.21386 0.98718 0.97964 0.99984 1.21251 0.95287 0.98992 1.00242 1.21156 1.00751 0.92539 1.01729 1.21054 0.96779 0.99006 0.99002 0.88031 0.88258 0.89190 0.92408 0.91283 0.93113 0.84926 0.86356 0.84336 0.84065 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.80 10.32 70.17 0.72 -0.08 16 2 C -0.19 -6.64 14.13 31.12 0.44 -6.20 16 3 C -0.22 -9.42 13.73 31.13 0.43 -8.99 16 4 C 0.18 7.78 6.21 70.18 0.44 8.21 16 5 O -0.39 -20.44 8.49 -148.98 -1.27 -21.70 16 6 C 0.24 12.45 2.59 29.10 0.08 12.53 16 7 H 0.03 1.25 7.70 -2.39 -0.02 1.24 16 8 C -0.57 -31.36 8.89 25.60 0.23 -31.13 16 9 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 10 C 0.04 2.24 5.24 84.66 0.44 2.69 16 11 N -0.86 -48.51 8.50 21.45 0.18 -48.33 16 12 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 16 C -0.07 -3.53 4.80 -19.87 -0.10 -3.62 16 17 C -0.07 -3.46 7.46 22.27 0.17 -3.30 16 18 C -0.16 -6.85 10.05 22.27 0.22 -6.63 16 19 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 20 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 21 C -0.14 -5.98 9.68 22.27 0.22 -5.76 16 22 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.69 8.09 -2.38 -0.02 2.67 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.13 7.45 5.50 -2.91 -0.02 7.44 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -65.18 283.25 5.78 -59.40 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.10 Total: 17.20 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 3.73 Total: -52.18 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.18 Total: -48.33 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.27 Total: -21.70 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.18 5.78 -59.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224359575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.859 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds