Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.47197 * 109.46924 * 174.99890 * 3 2 1 6 6 C 3.47004 * 155.08257 * 8.55368 * 2 1 3 7 7 C 4.80947 * 162.00634 * 13.03596 * 2 1 3 8 8 C 1.39532 * 120.14272 * 359.88998 * 7 6 5 9 9 C 1.37977 * 119.85673 * 179.78906 * 8 7 6 10 10 C 1.38345 * 120.13918 * 0.47574 * 9 8 7 11 11 C 1.38342 * 120.28625 * 359.77624 * 10 9 8 12 12 C 1.37969 * 120.14631 * 359.97438 * 11 10 9 13 13 O 1.42897 * 109.46881 * 294.99866 * 3 2 1 14 14 C 1.34923 * 117.00245 * 90.00094 * 13 3 2 15 15 H 1.08003 * 119.99710 * 359.97438 * 14 13 3 16 16 C 1.38636 * 120.00335 * 179.97438 * 14 13 3 17 17 N 1.31584 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00378 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46618 * 59.99917 * 18 16 14 20 20 H 1.48497 * 109.47488 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47064 * 300.00132 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08001 * 120.06908 * 0.02709 * 8 7 6 28 28 H 1.07996 * 119.92978 * 180.25270 * 9 8 7 29 29 H 1.07999 * 119.85361 * 179.76874 * 10 9 8 30 30 H 1.08000 * 119.92726 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.07887 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00575 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5070 1.4443 0.1210 6 6 4.6770 1.4457 0.2174 7 6 6.1042 1.4474 0.3351 8 6 6.8038 0.2416 0.3950 9 6 8.1792 0.2501 0.5040 10 6 8.8638 1.4508 0.5638 11 6 8.1757 2.6497 0.5102 12 6 6.8008 2.6550 0.3961 13 8 1.6620 2.0814 -1.2210 14 6 0.4727 2.7184 -1.2365 15 1 -0.1458 2.7288 -0.3512 16 6 0.0447 3.3597 -2.3887 17 7 0.7985 3.3476 -3.4671 18 14 -1.6022 4.2411 -2.4102 19 1 -1.6037 5.3123 -1.3817 20 1 -1.8248 4.8416 -3.7500 21 1 -2.6869 3.2706 -2.1158 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 6.2700 -0.6963 0.3523 28 1 8.7222 -0.6825 0.5463 29 1 9.9402 1.4521 0.6528 30 1 8.7160 3.5837 0.5577 31 1 6.2647 3.5916 0.3547 32 1 0.4989 3.7959 -4.2734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = 29.407666 kcal Electronic energy + Delta-G solvation = -14515.003767 eV Core-core repulsion = 12021.155457 eV Total energy + Delta-G solvation = -2493.848310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00249 -37.26554 -33.69944 -32.49963 -31.25870 -30.89544 -30.00258 -26.31449 -24.07211 -22.71964 -22.42468 -20.88033 -18.02803 -17.68989 -16.21540 -15.51659 -14.90421 -14.70588 -14.33047 -13.83644 -13.58450 -13.39233 -13.09802 -12.99542 -11.81073 -11.60662 -11.44545 -11.26146 -11.20443 -10.98196 -10.86457 -10.55329 -10.36383 -10.26662 -10.10046 -9.30993 -9.13844 -8.92618 -8.23499 -8.01141 -5.97488 -3.62162 1.08955 1.43642 3.12046 3.21584 3.30278 3.33730 3.35849 4.09603 4.36573 4.52830 4.96795 5.00213 5.12878 5.32646 5.44718 5.58774 5.61681 5.70622 5.81135 5.90930 6.06844 6.15474 6.24763 6.38954 6.50230 6.51547 6.54299 6.63435 6.69747 6.87933 7.01631 7.16284 7.43238 8.06651 8.39026 9.44113 10.07780 11.22655 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.033546 B = 0.005151 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.469262 B = 5434.679045 C = 6025.842085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.196 3.804 4 H 0.067 0.933 5 C -0.095 4.095 6 C -0.186 4.186 7 C 0.042 3.958 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.101 4.101 13 O -0.275 6.275 14 C -0.362 4.362 15 H 0.068 0.932 16 C 0.025 3.975 17 N -0.886 5.886 18 Si 0.924 3.076 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.276 1.276 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -4.760 8.692 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.137 3.863 4 H 0.085 0.915 5 C -0.095 4.095 6 C -0.187 4.187 7 C 0.042 3.958 8 C -0.122 4.122 9 C -0.139 4.139 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.119 4.119 13 O -0.190 6.190 14 C -0.441 4.441 15 H 0.086 0.914 16 C -0.174 4.174 17 N -0.528 5.528 18 Si 0.751 3.249 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.202 1.202 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.359 -4.701 8.349 14.111 hybrid contribution -0.903 0.468 0.122 1.025 sum 9.456 -4.233 8.471 13.382 Atomic orbital electron populations 1.21815 0.95063 1.00394 1.03535 1.21942 0.97021 0.96678 1.01190 1.18670 0.82201 0.93732 0.91703 0.91519 1.22759 0.93542 0.96927 0.96275 1.19016 0.90868 1.04687 1.04103 1.15904 0.86622 0.93543 0.99721 1.21256 0.94140 0.97300 0.99531 1.21035 0.93905 0.98156 1.00783 1.21185 0.99772 0.92571 1.00694 1.21060 0.93906 0.98226 1.00535 1.21321 0.94174 0.97541 0.98840 1.85809 1.37666 1.68810 1.26710 1.20821 0.94086 1.30795 0.98393 0.91438 1.24958 0.98776 0.98545 0.95087 1.70024 1.36873 1.44058 1.01829 0.86059 0.81934 0.79506 0.77385 1.20333 1.20870 1.20205 0.93972 0.89609 0.93648 0.92883 0.91540 0.85726 0.85857 0.86117 0.85775 0.85479 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.17 37.16 0.34 -2.46 16 2 C -0.13 -2.53 5.60 -26.73 -0.15 -2.68 16 3 C 0.20 4.44 2.79 -29.52 -0.08 4.36 16 4 H 0.07 1.44 7.80 -51.93 -0.41 1.04 16 5 C -0.09 -2.08 12.94 -37.12 -0.48 -2.56 16 6 C -0.19 -3.76 13.24 -38.83 -0.51 -4.28 16 7 C 0.04 0.71 5.72 -107.00 -0.61 0.10 16 8 C -0.10 -1.47 9.75 -39.19 -0.38 -1.85 16 9 C -0.12 -1.39 10.03 -39.64 -0.40 -1.79 16 10 C -0.12 -1.35 10.04 -39.50 -0.40 -1.75 16 11 C -0.12 -1.43 10.03 -39.64 -0.40 -1.83 16 12 C -0.10 -1.50 9.75 -39.19 -0.38 -1.88 16 13 O -0.27 -7.85 9.33 -16.49 -0.15 -8.00 16 14 C -0.36 -10.25 7.58 30.88 0.23 -10.02 16 15 H 0.07 1.76 7.37 -52.48 -0.39 1.38 16 16 C 0.03 0.73 5.49 -17.51 -0.10 0.63 16 17 N -0.89 -27.66 13.67 55.48 0.76 -26.90 16 18 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 1.87 6.29 -51.93 -0.33 1.54 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -32.69 288.64 -7.44 -40.14 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.06 Total: -0.23 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.32 Total: -26.01 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.76 Total: -26.90 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.15 Total: -8.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.69 -7.44 -40.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.545 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds