Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99962 * 2 1 4 4 C 1.53003 * 109.47142 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46954 * 62.31917 * 4 3 2 6 6 C 1.46852 * 111.00143 * 52.03724 * 5 4 3 7 7 C 1.53027 * 109.52453 * 185.84019 * 6 5 4 8 8 C 1.53120 * 109.27888 * 300.81507 * 7 6 5 9 9 O 1.42901 * 109.57867 * 177.59075 * 8 7 6 10 10 C 1.34924 * 116.99887 * 90.28768 * 9 8 7 11 11 H 1.07996 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.38635 * 119.99660 * 180.02562 * 10 9 8 13 13 N 1.31575 * 120.00582 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99696 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47176 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46955 * 120.00065 * 14 12 10 17 17 H 1.48500 * 109.47429 * 240.00418 * 14 12 10 18 18 C 1.53127 * 109.15569 * 57.65528 * 8 7 6 19 19 C 1.46846 * 110.99769 * 176.24392 * 5 4 3 20 20 H 1.08992 * 109.47285 * 300.00283 * 1 2 3 21 21 H 1.09004 * 109.47017 * 60.00313 * 1 2 3 22 22 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47212 * 59.99781 * 3 2 1 24 24 H 1.09002 * 109.46956 * 299.99829 * 3 2 1 25 25 H 1.08999 * 109.46709 * 182.31908 * 4 3 2 26 26 H 1.08998 * 109.47108 * 302.32145 * 4 3 2 27 27 H 1.08998 * 109.45943 * 305.85538 * 6 5 4 28 28 H 1.09004 * 109.46022 * 65.81712 * 6 5 4 29 29 H 1.09003 * 109.50611 * 180.88019 * 7 6 5 30 30 H 1.09004 * 109.50674 * 60.75809 * 7 6 5 31 31 H 1.09001 * 109.52807 * 297.75314 * 8 7 6 32 32 H 0.96998 * 120.00227 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.50143 * 182.40397 * 18 8 7 34 34 H 1.09004 * 109.50105 * 62.29074 * 18 8 7 35 35 H 1.08999 * 109.46373 * 294.17617 * 19 5 4 36 36 H 1.08995 * 109.46143 * 54.15690 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9733 0.5044 -1.2255 6 6 3.4030 1.1473 -2.4163 7 6 3.7599 0.3295 -3.6595 8 6 5.2832 0.2395 -3.7853 9 8 5.6236 -0.5700 -4.9127 10 6 5.7751 0.0604 -6.0960 11 1 5.6389 1.1298 -6.1595 12 6 6.1047 -0.6650 -7.2305 13 7 6.2693 -1.9682 -7.1536 14 14 6.3138 0.2076 -8.8689 15 1 6.0759 1.6624 -8.6889 16 1 7.6938 -0.0092 -9.3726 17 1 5.3384 -0.3364 -9.8476 18 6 5.8563 -0.3893 -2.5122 19 6 5.4387 0.4494 -1.3022 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 3.9786 2.1796 0.0422 26 1 3.8539 0.6084 0.8693 27 1 2.3190 1.2013 -2.3159 28 1 3.8090 2.1542 -2.5150 29 1 3.3498 0.8153 -4.5449 30 1 3.3425 -0.6733 -3.5677 31 1 5.6977 1.2391 -3.9163 32 1 6.4996 -2.4757 -7.9475 33 1 6.9441 -0.4170 -2.5778 34 1 5.4719 -1.4034 -2.4023 35 1 5.8351 1.4594 -1.4062 36 1 5.8331 -0.0037 -0.3928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = -76.274214 kcal Electronic energy + Delta-G solvation = -16537.114058 eV Core-core repulsion = 13829.092781 eV Total energy + Delta-G solvation = -2708.021278 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07567 -37.57545 -35.89428 -32.67122 -31.22762 -30.41368 -28.59970 -26.19196 -24.63917 -23.50085 -22.41110 -20.98273 -19.20985 -17.43892 -16.65963 -16.40633 -15.48262 -15.19213 -14.70218 -14.39423 -14.01616 -13.89433 -13.42670 -13.10619 -12.79830 -12.27325 -11.93670 -11.69859 -11.58421 -11.30266 -11.19748 -10.96774 -10.71541 -10.64902 -10.49726 -10.25089 -9.70550 -9.65512 -9.26434 -8.97003 -8.02920 -7.88976 -5.88277 -3.51096 3.33785 3.36848 3.41271 3.74063 4.09986 4.35585 4.91421 5.04087 5.17997 5.22736 5.28603 5.33975 5.39172 5.43412 5.50140 5.56279 5.63200 5.68285 5.80128 5.84386 5.95953 6.11682 6.24680 6.28651 6.58780 6.67181 6.82411 6.99535 7.10478 7.15534 7.39574 7.41680 7.53851 8.49821 9.55177 10.26521 11.32960 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.042765 B = 0.005477 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.589247 B = 5111.266247 C = 5351.609908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.059 3.941 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.058 3.942 7 C -0.133 4.133 8 C 0.100 3.900 9 O -0.286 6.286 10 C -0.356 4.356 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.889 5.889 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.111 4.111 19 C 0.063 3.937 20 H 0.035 0.965 21 H 0.038 0.962 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.256 0.744 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 7.884 14.196 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.018 4.018 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.070 4.070 7 C -0.172 4.172 8 C 0.040 3.960 9 O -0.201 6.201 10 C -0.436 4.436 11 H 0.078 0.922 12 C -0.177 4.177 13 N -0.532 5.532 14 Si 0.749 3.251 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.149 4.149 19 C -0.065 4.065 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.103 0.897 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.013 6.907 14.125 17.647 hybrid contribution 0.077 1.809 -0.893 2.019 sum -7.936 8.717 13.232 17.721 Atomic orbital electron populations 1.22726 0.81848 1.02688 0.99413 1.88053 1.18731 1.26913 1.95177 1.22669 0.93792 0.85476 0.99818 1.22113 0.93217 0.97317 0.94514 1.61921 1.09040 1.53064 1.01261 1.22167 0.99180 0.95182 0.90458 1.22111 0.99010 1.00878 0.95174 1.21735 0.92231 0.93669 0.88350 1.85693 1.87892 1.32497 1.13989 1.20905 1.46267 0.91399 0.84981 0.92157 1.24928 0.99278 0.95579 0.97867 1.70029 1.49600 1.05197 1.28395 0.85947 0.77791 0.78630 0.82721 1.20040 1.20952 1.20934 1.21594 1.00365 1.00356 0.92583 1.22058 0.86806 0.98468 0.99135 0.94650 0.94301 0.89683 0.93382 0.92960 0.93845 0.90009 0.91048 0.95746 0.91759 0.90873 0.95023 0.93360 0.91430 0.90652 0.95406 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.99 10.61 -35.23 -0.37 -5.36 16 3 C 0.06 0.67 5.56 37.16 0.21 0.88 16 4 C 0.06 0.69 5.52 -3.82 -0.02 0.67 16 5 N -0.53 -8.22 4.67 -234.68 -1.10 -9.32 16 6 C 0.06 0.93 5.04 -3.84 -0.02 0.91 16 7 C -0.13 -2.70 5.72 -26.65 -0.15 -2.85 16 8 C 0.10 2.27 2.72 -26.60 -0.07 2.19 16 9 O -0.29 -8.39 9.43 -16.49 -0.16 -8.54 16 10 C -0.36 -10.65 9.78 30.88 0.30 -10.34 16 11 H 0.06 1.71 7.64 -52.49 -0.40 1.31 16 12 C 0.02 0.64 5.49 -17.52 -0.10 0.54 16 13 N -0.89 -28.46 13.67 55.48 0.76 -27.70 16 14 Si 0.92 22.44 29.55 -169.99 -5.02 17.42 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.11 -2.16 5.75 -26.65 -0.15 -2.31 16 19 C 0.06 0.98 5.46 -3.84 -0.02 0.96 16 20 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.58 6.05 -51.93 -0.31 0.27 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.06 5.79 -51.93 -0.30 0.76 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 292.73 15.07 4.41 4.41 Total: -1.00 -34.12 292.73 -6.44 -40.56 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.05 Total: -3.53 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 1.09 Total: -7.95 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.34 Total: -37.02 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.53 Total: -13.90 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.12 -6.44 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.709 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds