Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99962 * 2 1 4 4 C 1.53003 * 109.47142 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46954 * 62.31917 * 4 3 2 6 6 C 1.46852 * 111.00143 * 52.03724 * 5 4 3 7 7 C 1.53027 * 109.52453 * 185.84019 * 6 5 4 8 8 C 1.53120 * 109.27888 * 300.81507 * 7 6 5 9 9 O 1.42901 * 109.57867 * 177.59075 * 8 7 6 10 10 C 1.34924 * 116.99887 * 90.28768 * 9 8 7 11 11 H 1.07996 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.38635 * 119.99660 * 180.02562 * 10 9 8 13 13 N 1.31575 * 120.00582 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99696 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47176 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46955 * 120.00065 * 14 12 10 17 17 H 1.48500 * 109.47429 * 240.00418 * 14 12 10 18 18 C 1.53127 * 109.15569 * 57.65528 * 8 7 6 19 19 C 1.46846 * 110.99769 * 176.24392 * 5 4 3 20 20 H 1.08992 * 109.47285 * 300.00283 * 1 2 3 21 21 H 1.09004 * 109.47017 * 60.00313 * 1 2 3 22 22 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47212 * 59.99781 * 3 2 1 24 24 H 1.09002 * 109.46956 * 299.99829 * 3 2 1 25 25 H 1.08999 * 109.46709 * 182.31908 * 4 3 2 26 26 H 1.08998 * 109.47108 * 302.32145 * 4 3 2 27 27 H 1.08998 * 109.45943 * 305.85538 * 6 5 4 28 28 H 1.09004 * 109.46022 * 65.81712 * 6 5 4 29 29 H 1.09003 * 109.50611 * 180.88019 * 7 6 5 30 30 H 1.09004 * 109.50674 * 60.75809 * 7 6 5 31 31 H 1.09001 * 109.52807 * 297.75314 * 8 7 6 32 32 H 0.96998 * 120.00227 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.50143 * 182.40397 * 18 8 7 34 34 H 1.09004 * 109.50105 * 62.29074 * 18 8 7 35 35 H 1.08999 * 109.46373 * 294.17617 * 19 5 4 36 36 H 1.08995 * 109.46143 * 54.15690 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9733 0.5044 -1.2255 6 6 3.4030 1.1473 -2.4163 7 6 3.7599 0.3295 -3.6595 8 6 5.2832 0.2395 -3.7853 9 8 5.6236 -0.5700 -4.9127 10 6 5.7751 0.0604 -6.0960 11 1 5.6389 1.1298 -6.1595 12 6 6.1047 -0.6650 -7.2305 13 7 6.2693 -1.9682 -7.1536 14 14 6.3138 0.2076 -8.8689 15 1 6.0759 1.6624 -8.6889 16 1 7.6938 -0.0092 -9.3726 17 1 5.3384 -0.3364 -9.8476 18 6 5.8563 -0.3893 -2.5122 19 6 5.4387 0.4494 -1.3022 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 3.9786 2.1796 0.0422 26 1 3.8539 0.6084 0.8693 27 1 2.3190 1.2013 -2.3159 28 1 3.8090 2.1542 -2.5150 29 1 3.3498 0.8153 -4.5449 30 1 3.3425 -0.6733 -3.5677 31 1 5.6977 1.2391 -3.9163 32 1 6.4996 -2.4757 -7.9475 33 1 6.9441 -0.4170 -2.5778 34 1 5.4719 -1.4034 -2.4023 35 1 5.8351 1.4594 -1.4062 36 1 5.8331 -0.0037 -0.3928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = -101.908567 kcal Electronic energy + Delta-G solvation = -16538.225647 eV Core-core repulsion = 13829.092781 eV Total energy + Delta-G solvation = -2709.132867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38898 -38.76755 -37.60609 -34.40292 -33.13836 -31.86417 -29.77577 -27.14240 -26.65996 -24.87640 -23.89471 -22.17475 -20.76587 -19.60857 -17.88906 -17.39093 -17.09564 -16.34091 -15.92949 -15.92225 -15.60667 -15.30107 -14.91871 -14.72768 -14.19036 -13.63154 -13.35988 -13.21123 -13.08613 -12.76389 -12.64557 -12.35107 -12.24525 -12.15021 -12.07850 -11.77715 -11.43081 -11.17891 -10.95987 -10.48792 -10.08232 -9.18074 -8.15717 -5.84644 1.38717 1.44829 1.55277 2.33451 2.85019 3.04641 3.16803 3.63926 3.90393 3.93868 4.12073 4.25826 4.28487 4.33050 4.41769 4.49074 4.50728 4.57901 4.61267 4.67959 4.71339 4.86494 4.91249 4.94195 5.03199 5.08275 5.11487 5.19282 5.37928 5.44465 6.14150 6.16706 6.23593 6.41543 7.27166 8.10875 9.09765 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.042765 B = 0.005477 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.589247 B = 5111.266247 C = 5351.609908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.547 5.547 6 C 0.071 3.929 7 C -0.125 4.125 8 C 0.089 3.911 9 O -0.331 6.331 10 C -0.370 4.370 11 H 0.070 0.930 12 C -0.045 4.045 13 N -0.942 5.942 14 Si 1.004 2.996 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.276 1.276 18 C -0.106 4.106 19 C 0.073 3.927 20 H 0.055 0.945 21 H 0.041 0.959 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.543 10.029 15.074 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.020 4.020 4 C -0.071 4.071 5 N -0.273 5.273 6 C -0.057 4.057 7 C -0.164 4.164 8 C 0.030 3.970 9 O -0.247 6.247 10 C -0.449 4.449 11 H 0.087 0.913 12 C -0.238 4.238 13 N -0.587 5.587 14 Si 0.826 3.174 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.144 4.144 19 C -0.055 4.055 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.553 9.078 15.042 19.541 hybrid contribution 0.205 1.123 -1.061 1.559 sum -8.347 10.201 13.981 19.215 Atomic orbital electron populations 1.22861 0.80373 1.03283 1.00537 1.88002 1.20544 1.28380 1.95445 1.22779 0.93063 0.84964 1.01169 1.22234 0.94046 0.98185 0.92648 1.61850 1.08823 1.54366 1.02265 1.21994 1.00240 0.94649 0.88810 1.21962 0.96894 1.00234 0.97303 1.22103 0.94037 0.93234 0.87613 1.85626 1.88558 1.35172 1.15349 1.21381 1.45890 0.91952 0.85686 0.91274 1.26217 0.98698 0.96463 1.02377 1.70210 1.51154 1.07382 1.29958 0.84715 0.77987 0.78106 0.76547 1.18088 1.20091 1.20177 1.21562 0.99952 0.99878 0.93040 1.21965 0.87272 0.98450 0.97769 0.92605 0.94013 0.89514 0.90610 0.92918 0.91634 0.89358 0.89530 0.94413 0.92924 0.93377 0.94979 0.93161 0.91802 0.92803 0.93987 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -10.10 10.61 -148.98 -1.58 -11.68 16 3 C 0.06 1.11 5.56 71.98 0.40 1.51 16 4 C 0.06 1.18 5.52 86.30 0.48 1.65 16 5 N -0.55 -15.95 4.67 -896.38 -4.19 -20.14 16 6 C 0.07 2.18 5.04 86.32 0.44 2.61 16 7 C -0.13 -5.17 5.72 30.64 0.18 -5.00 16 8 C 0.09 4.11 2.72 30.68 0.08 4.20 16 9 O -0.33 -20.18 9.43 -81.93 -0.77 -20.96 16 10 C -0.37 -22.60 9.78 67.91 0.66 -21.93 16 11 H 0.07 3.94 7.64 -2.91 -0.02 3.92 16 12 C -0.05 -2.74 5.49 84.83 0.47 -2.27 16 13 N -0.94 -61.97 13.67 21.61 0.30 -61.67 16 14 Si 1.00 46.27 29.55 68.60 2.03 48.30 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 C -0.11 -4.19 5.75 30.65 0.18 -4.01 16 19 C 0.07 2.13 5.46 86.33 0.47 2.60 16 20 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.01 6.05 -2.39 -0.01 1.00 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 2.42 5.79 -2.39 -0.01 2.40 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.03 1.46 7.80 -2.39 -0.02 1.45 16 32 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 2.37 8.12 -2.39 -0.02 2.35 16 Total: -1.00 -75.65 292.73 1.41 -74.24 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.03 Total: 10.84 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 4.60 Total: -18.93 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.89 Total: -81.81 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -2.35 Total: -32.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.65 1.41 -74.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.666 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds