Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46793 * 109.64284 * 3 2 1 5 5 H 1.09007 * 109.47284 * 54.99902 * 4 3 2 6 6 C 1.53000 * 109.46961 * 174.99500 * 4 3 2 7 7 O 1.42898 * 109.46883 * 294.99651 * 4 3 2 8 8 C 1.35676 * 116.99592 * 156.23172 * 7 4 3 9 9 C 1.39310 * 119.81944 * 5.23484 * 8 7 4 10 10 C 1.36439 * 120.18862 * 180.02562 * 9 8 7 11 11 C 1.40845 * 119.80659 * 0.02562 * 10 9 8 12 12 C 1.41213 * 120.17683 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99682 * 333.82884 * 12 11 10 14 14 C 1.39888 * 119.99840 * 153.82417 * 12 11 10 15 15 N 1.30884 * 120.00323 * 346.86628 * 14 12 11 16 16 Si 1.86801 * 119.99867 * 166.86817 * 14 12 11 17 17 H 1.48501 * 109.47124 * 90.00320 * 16 14 12 18 18 H 1.48503 * 109.47028 * 210.00223 * 16 14 12 19 19 H 1.48503 * 109.47030 * 329.99807 * 16 14 12 20 20 C 1.40827 * 119.64084 * 0.24610 * 11 10 9 21 21 C 1.36438 * 119.81441 * 359.47170 * 20 11 10 22 22 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 23 23 H 1.08991 * 109.47434 * 349.64098 * 3 2 1 24 24 H 1.09002 * 109.46795 * 229.63700 * 3 2 1 25 25 H 1.08998 * 109.47166 * 180.02562 * 6 4 3 26 26 H 1.08998 * 109.47519 * 300.00199 * 6 4 3 27 27 H 1.08999 * 109.47066 * 59.99911 * 6 4 3 28 28 H 1.08004 * 119.90888 * 0.02915 * 9 8 7 29 29 H 1.07993 * 120.10229 * 179.97438 * 10 9 8 30 30 H 0.96993 * 120.00286 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.09243 * 179.72353 * 20 11 10 32 32 H 1.08002 * 119.90898 * 180.27400 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.4858 -1.3586 5 1 2.7206 1.4597 -1.5833 6 6 4.6805 0.6057 -1.3181 7 8 2.7781 -0.4496 -2.3707 8 6 2.6932 0.0185 -3.6413 9 6 3.0745 1.3283 -3.9239 10 6 2.9917 1.8070 -5.1989 11 6 2.5186 0.9730 -6.2305 12 6 2.4291 1.4606 -7.5528 13 1 2.3050 2.5186 -7.7309 14 6 2.5015 0.5733 -8.6318 15 7 2.9048 -0.6572 -8.4414 16 14 2.0224 1.1446 -10.3446 17 1 3.2171 1.6924 -11.0359 18 1 1.4865 -0.0044 -11.1178 19 1 0.9827 2.1999 -10.2416 20 6 2.1297 -0.3479 -5.9352 21 6 2.2242 -0.8129 -4.6560 22 1 -1.0501 0.0001 0.0003 23 1 3.0098 -1.0100 0.1848 24 1 3.0090 0.6664 0.7831 25 1 5.0436 0.9517 -2.2858 26 1 4.9685 1.3191 -0.5461 27 1 5.1156 -0.3681 -1.0934 28 1 3.4368 1.9666 -3.1316 29 1 3.2873 2.8227 -5.4163 30 1 2.9546 -1.2725 -9.1895 31 1 1.7616 -0.9923 -6.7198 32 1 1.9306 -1.8271 -4.4286 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264687.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = 24.874981 kcal Electronic energy + Delta-G solvation = -15088.586740 eV Core-core repulsion = 12594.541878 eV Total energy + Delta-G solvation = -2494.044862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10367 -36.72793 -34.31030 -33.14898 -31.52211 -29.53042 -28.97326 -27.20092 -24.86072 -22.31943 -20.77142 -20.12108 -18.03680 -17.36266 -17.09544 -15.20919 -14.90166 -14.77496 -13.95756 -13.82470 -13.43685 -13.06779 -12.65761 -12.43653 -12.15933 -11.76957 -11.68984 -11.58742 -11.10808 -10.86222 -10.77770 -10.58555 -10.08143 -9.95267 -9.80402 -9.77731 -9.27144 -9.00476 -7.59927 -6.94549 -6.65494 -4.23279 2.81207 2.98839 2.99310 3.04134 3.10366 3.14549 3.23685 3.98340 4.13339 4.51246 4.67966 5.15877 5.30822 5.39753 5.63427 5.70623 5.78204 5.88854 6.09143 6.11031 6.15551 6.28200 6.43231 6.78423 7.01892 7.15653 7.24015 7.52226 7.60244 7.81844 7.84250 8.04533 8.25262 8.50626 8.70017 8.94485 9.02885 10.28677 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.046694 B = 0.005595 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.508739 B = 5003.658734 C = 5164.537157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C -0.007 4.007 4 C 0.092 3.908 5 H 0.068 0.932 6 C -0.178 4.178 7 O -0.319 6.319 8 C 0.000 4.000 9 C -0.172 4.172 10 C -0.195 4.195 11 C 0.085 3.915 12 C -0.463 4.463 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.806 5.806 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.129 4.129 21 C -0.124 4.124 22 H 0.215 0.785 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 1.158 10.105 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.177 4.177 3 C -0.044 4.044 4 C 0.034 3.966 5 H 0.086 0.914 6 C -0.236 4.236 7 O -0.235 6.235 8 C -0.043 4.043 9 C -0.190 4.190 10 C -0.215 4.215 11 C 0.083 3.917 12 C -0.494 4.494 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.433 5.433 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.149 4.149 21 C -0.143 4.143 22 H 0.231 0.769 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.162 0.753 10.025 10.055 hybrid contribution -0.211 0.421 -0.855 0.976 sum -0.373 1.174 9.170 9.253 Atomic orbital electron populations 1.24801 0.95902 1.01363 1.01013 1.22929 0.94423 1.00191 1.00157 1.18855 0.85362 1.03510 0.96644 1.22020 0.94276 0.93539 0.86750 0.91360 1.22369 0.95712 1.02414 1.03069 1.85899 1.85927 1.37044 1.14668 1.18600 1.09025 0.93844 0.82828 1.20456 1.06679 0.94639 0.97249 1.20600 1.08107 0.99822 0.92961 1.17606 0.89610 0.91758 0.92754 1.19446 1.44779 0.94858 0.90275 0.90712 1.25859 0.92581 0.94491 1.01356 1.69806 1.34468 1.05474 1.33556 0.86312 0.79694 0.79272 0.81383 1.19633 1.20199 1.18634 1.21046 1.02293 0.97585 0.93955 1.19863 1.04260 0.97952 0.92183 0.76850 0.88888 0.88386 0.91110 0.91896 0.91779 0.88549 0.88805 0.91049 0.85422 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.02 19.25 29.55 0.57 -2.46 16 2 C -0.18 -2.69 13.10 -37.12 -0.49 -3.17 16 3 C -0.01 -0.10 5.42 -29.51 -0.16 -0.26 16 4 C 0.09 1.46 2.20 -26.73 -0.06 1.41 16 5 H 0.07 1.14 6.36 -51.93 -0.33 0.81 16 6 C -0.18 -2.45 9.14 37.16 0.34 -2.11 16 7 O -0.32 -6.63 9.53 -18.73 -0.18 -6.80 16 8 C 0.00 0.01 6.61 -38.78 -0.26 -0.25 16 9 C -0.17 -3.92 8.11 -39.83 -0.32 -4.25 16 10 C -0.20 -4.86 9.75 -39.24 -0.38 -5.24 16 11 C 0.08 2.30 5.57 -106.80 -0.59 1.71 16 12 C -0.46 -12.47 9.05 -37.84 -0.34 -12.81 16 13 H 0.07 1.93 7.88 -52.48 -0.41 1.52 16 14 C 0.07 1.86 5.22 -17.34 -0.09 1.77 16 15 N -0.81 -21.21 10.81 55.54 0.60 -20.61 16 16 Si 0.91 18.97 29.58 -169.99 -5.03 13.94 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.13 -3.44 8.62 -39.25 -0.34 -3.78 16 21 C -0.12 -3.07 9.92 -39.83 -0.40 -3.46 16 22 H 0.21 2.25 7.80 -54.09 -0.42 1.83 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.92 5.35 -52.48 -0.28 1.63 16 29 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.13 3.48 6.12 -52.49 -0.32 3.16 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -29.39 280.46 -6.69 -36.08 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.79 Total: 6.06 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: -2.52 Total: -32.91 kcal Atomic # 7 Polarization: -21.21 SS G_CDS: 0.60 Total: -20.61 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.80 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.39 -6.69 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264687.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.957 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds