Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46793 * 109.64284 * 3 2 1 5 5 H 1.09007 * 109.47284 * 54.99902 * 4 3 2 6 6 C 1.53000 * 109.46961 * 174.99500 * 4 3 2 7 7 O 1.42898 * 109.46883 * 294.99651 * 4 3 2 8 8 C 1.35676 * 116.99592 * 156.23172 * 7 4 3 9 9 C 1.39310 * 119.81944 * 5.23484 * 8 7 4 10 10 C 1.36439 * 120.18862 * 180.02562 * 9 8 7 11 11 C 1.40845 * 119.80659 * 0.02562 * 10 9 8 12 12 C 1.41213 * 120.17683 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99682 * 333.82884 * 12 11 10 14 14 C 1.39888 * 119.99840 * 153.82417 * 12 11 10 15 15 N 1.30884 * 120.00323 * 346.86628 * 14 12 11 16 16 Si 1.86801 * 119.99867 * 166.86817 * 14 12 11 17 17 H 1.48501 * 109.47124 * 90.00320 * 16 14 12 18 18 H 1.48503 * 109.47028 * 210.00223 * 16 14 12 19 19 H 1.48503 * 109.47030 * 329.99807 * 16 14 12 20 20 C 1.40827 * 119.64084 * 0.24610 * 11 10 9 21 21 C 1.36438 * 119.81441 * 359.47170 * 20 11 10 22 22 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 23 23 H 1.08991 * 109.47434 * 349.64098 * 3 2 1 24 24 H 1.09002 * 109.46795 * 229.63700 * 3 2 1 25 25 H 1.08998 * 109.47166 * 180.02562 * 6 4 3 26 26 H 1.08998 * 109.47519 * 300.00199 * 6 4 3 27 27 H 1.08999 * 109.47066 * 59.99911 * 6 4 3 28 28 H 1.08004 * 119.90888 * 0.02915 * 9 8 7 29 29 H 1.07993 * 120.10229 * 179.97438 * 10 9 8 30 30 H 0.96993 * 120.00286 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.09243 * 179.72353 * 20 11 10 32 32 H 1.08002 * 119.90898 * 180.27400 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.4858 -1.3586 5 1 2.7206 1.4597 -1.5833 6 6 4.6805 0.6057 -1.3181 7 8 2.7781 -0.4496 -2.3707 8 6 2.6932 0.0185 -3.6413 9 6 3.0745 1.3283 -3.9239 10 6 2.9917 1.8070 -5.1989 11 6 2.5186 0.9730 -6.2305 12 6 2.4291 1.4606 -7.5528 13 1 2.3050 2.5186 -7.7309 14 6 2.5015 0.5733 -8.6318 15 7 2.9048 -0.6572 -8.4414 16 14 2.0224 1.1446 -10.3446 17 1 3.2171 1.6924 -11.0359 18 1 1.4865 -0.0044 -11.1178 19 1 0.9827 2.1999 -10.2416 20 6 2.1297 -0.3479 -5.9352 21 6 2.2242 -0.8129 -4.6560 22 1 -1.0501 0.0001 0.0003 23 1 3.0098 -1.0100 0.1848 24 1 3.0090 0.6664 0.7831 25 1 5.0436 0.9517 -2.2858 26 1 4.9685 1.3191 -0.5461 27 1 5.1156 -0.3681 -1.0934 28 1 3.4368 1.9666 -3.1316 29 1 3.2873 2.8227 -5.4163 30 1 2.9546 -1.2725 -9.1895 31 1 1.7616 -0.9923 -6.7198 32 1 1.9306 -1.8271 -4.4286 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264687.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = 9.560350 kcal Electronic energy + Delta-G solvation = -15089.250832 eV Core-core repulsion = 12594.541878 eV Total energy + Delta-G solvation = -2494.708954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75521 -38.47998 -35.72277 -34.88423 -32.78250 -31.39325 -30.87172 -28.28120 -26.76335 -23.89525 -22.65579 -21.72842 -19.37151 -18.98192 -18.76282 -17.04962 -16.46983 -16.09456 -15.74267 -15.25008 -14.87355 -14.51411 -14.17112 -14.05681 -13.72474 -13.45195 -13.25864 -12.96158 -12.77493 -12.54871 -12.32033 -12.22437 -11.65489 -11.58778 -11.22635 -11.06385 -10.96971 -10.83929 -9.54946 -8.86255 -8.55469 -6.23442 0.95857 1.03588 1.39991 1.50769 1.55426 1.87253 1.94926 2.23916 2.66622 2.75747 3.51140 3.70975 4.00373 4.13476 4.24109 4.33911 4.37226 4.67766 4.73187 4.81314 4.92243 4.98597 5.09197 5.16648 5.23710 5.30797 5.35316 5.61619 5.67215 5.90265 6.06861 6.28016 6.58806 6.74260 6.83708 6.96744 7.12114 8.40780 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.046694 B = 0.005595 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.508739 B = 5003.658734 C = 5164.537157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.213 4.213 3 C -0.003 4.003 4 C 0.081 3.919 5 H 0.062 0.938 6 C -0.173 4.173 7 O -0.331 6.331 8 C 0.011 3.989 9 C -0.168 4.168 10 C -0.205 4.205 11 C 0.051 3.949 12 C -0.499 4.499 13 H 0.075 0.925 14 C 0.031 3.969 15 N -0.839 5.839 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.148 4.148 21 C -0.140 4.140 22 H 0.240 0.760 23 H 0.102 0.898 24 H 0.137 0.863 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.286 0.714 31 H 0.112 0.888 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 1.875 11.244 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.213 4.213 3 C -0.039 4.039 4 C 0.024 3.976 5 H 0.080 0.920 6 C -0.230 4.230 7 O -0.248 6.248 8 C -0.033 4.033 9 C -0.186 4.186 10 C -0.224 4.224 11 C 0.049 3.951 12 C -0.529 4.529 13 H 0.093 0.907 14 C -0.182 4.182 15 N -0.466 5.466 16 Si 0.805 3.195 17 H -0.188 1.188 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.168 4.168 21 C -0.158 4.158 22 H 0.256 0.744 23 H 0.120 0.880 24 H 0.155 0.845 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.112 1.471 11.196 11.293 hybrid contribution -0.285 0.180 -0.996 1.051 sum -0.173 1.650 10.201 10.335 Atomic orbital electron populations 1.25653 0.97052 1.00715 1.00122 1.23642 0.95683 1.00946 1.01029 1.18993 0.84354 1.04949 0.95620 1.22442 0.95971 0.92482 0.86681 0.92048 1.22339 0.93638 1.03890 1.03161 1.85891 1.85906 1.38864 1.14098 1.18655 1.07083 0.93600 0.83925 1.20736 1.05687 0.94874 0.97351 1.20845 1.07904 1.00231 0.93451 1.17965 0.90841 0.92491 0.93831 1.19706 1.46767 0.95311 0.91135 0.90683 1.26737 0.91792 0.94353 1.05329 1.69873 1.34987 1.06627 1.35144 0.85174 0.79459 0.78928 0.75925 1.18758 1.19235 1.18319 1.20958 1.03679 0.97698 0.94423 1.20030 1.04783 0.98806 0.92223 0.74386 0.88012 0.84527 0.93352 0.88063 0.91121 0.85332 0.87668 0.90362 0.87025 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.80 19.25 74.32 1.43 -4.37 16 2 C -0.21 -6.03 13.10 31.13 0.41 -5.63 16 3 C 0.00 -0.07 5.42 28.79 0.16 0.08 16 4 C 0.08 2.38 2.20 30.60 0.07 2.45 16 5 H 0.06 1.90 6.36 -2.38 -0.02 1.89 16 6 C -0.17 -4.22 9.14 71.98 0.66 -3.56 16 7 O -0.33 -13.32 9.53 -89.94 -0.86 -14.18 16 8 C 0.01 0.53 6.61 22.79 0.15 0.68 16 9 C -0.17 -7.56 8.11 22.11 0.18 -7.38 16 10 C -0.20 -10.26 9.75 22.49 0.22 -10.04 16 11 C 0.05 2.83 5.57 -21.28 -0.12 2.71 16 12 C -0.50 -27.56 9.05 23.40 0.21 -27.35 16 13 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 14 C 0.03 1.58 5.22 85.23 0.45 2.02 16 15 N -0.84 -45.22 10.81 21.82 0.24 -44.99 16 16 Si 0.98 39.12 29.58 68.60 2.03 41.15 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 C -0.15 -8.16 8.62 22.48 0.19 -7.97 16 21 C -0.14 -7.06 9.92 22.11 0.22 -6.84 16 22 H 0.24 4.54 7.80 -4.41 -0.03 4.50 16 23 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 1.40 6.77 -2.39 -0.02 1.39 16 26 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.13 4.85 5.35 -2.91 -0.02 4.84 16 29 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 31 H 0.11 6.40 6.12 -2.91 -0.02 6.38 16 32 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -64.62 280.46 6.73 -57.89 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.10 Total: 25.33 kcal Atomic # 6 Polarization: -69.42 SS G_CDS: 4.22 Total: -65.19 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.24 Total: -44.99 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.86 Total: -14.18 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -64.62 6.73 -57.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264687.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.449 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds