Wall clock time and date at job start Sun Mar 29 2020 22:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47030 * 226.90471 * 3 2 1 5 5 H 1.09002 * 109.46809 * 305.00138 * 4 3 2 6 6 C 1.52997 * 109.47275 * 185.00107 * 4 3 2 7 7 O 1.42901 * 109.47178 * 64.99904 * 4 3 2 8 8 C 1.35675 * 116.99728 * 203.24127 * 7 4 3 9 9 C 1.39314 * 119.81987 * 355.51748 * 8 7 4 10 10 C 1.36435 * 120.18389 * 180.25735 * 9 8 7 11 11 C 1.40840 * 119.81181 * 359.47266 * 10 9 8 12 12 C 1.41213 * 120.18007 * 180.30145 * 11 10 9 13 13 H 1.08000 * 119.99779 * 331.09335 * 12 11 10 14 14 C 1.39891 * 119.99920 * 151.09980 * 12 11 10 15 15 N 1.30880 * 120.00378 * 348.97864 * 14 12 11 16 16 Si 1.86803 * 119.99742 * 168.97760 * 14 12 11 17 17 H 1.48499 * 109.46915 * 89.99978 * 16 14 12 18 18 H 1.48496 * 109.47259 * 209.99630 * 16 14 12 19 19 H 1.48501 * 109.47150 * 330.00404 * 16 14 12 20 20 C 1.40838 * 119.64130 * 0.27580 * 11 10 9 21 21 C 1.36444 * 119.80833 * 0.02562 * 20 11 10 22 22 H 4.44648 * 5.63399 * 179.97438 * 4 1 2 23 23 H 1.09004 * 109.47439 * 106.90275 * 3 2 1 24 24 H 1.08999 * 109.47306 * 346.90002 * 3 2 1 25 25 H 1.09009 * 109.47070 * 59.99836 * 6 4 3 26 26 H 1.08996 * 109.47617 * 179.97438 * 6 4 3 27 27 H 1.09002 * 109.47237 * 300.00332 * 6 4 3 28 28 H 1.07998 * 119.90897 * 0.02697 * 9 8 7 29 29 H 1.07997 * 120.09705 * 179.74532 * 10 9 8 30 30 H 0.96990 * 120.00120 * 180.02562 * 15 14 12 31 31 H 1.07996 * 120.09473 * 180.02562 * 20 11 10 32 32 H 1.07999 * 119.90371 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9864 1.0534 5 1 2.7204 1.9692 0.8718 6 6 4.6803 1.0802 0.9688 7 8 2.7777 0.5312 2.3541 8 6 2.7033 1.4646 3.3359 9 6 3.0801 2.7796 3.0715 10 6 3.0133 3.7231 4.0547 11 6 2.5513 3.3671 5.3367 12 6 2.4729 4.3389 6.3582 13 1 3.1505 5.1799 6.3566 14 6 1.5177 4.2121 7.3724 15 7 0.5623 3.3241 7.2643 16 14 1.6058 5.3103 8.8809 17 1 0.8219 6.5480 8.6386 18 1 1.0438 4.5897 10.0514 19 1 3.0218 5.6664 9.1520 20 6 2.1673 2.0367 5.5940 21 6 2.2461 1.1039 4.6014 22 1 -1.0501 0.0000 -0.0003 23 1 3.0093 0.2996 -0.9833 24 1 3.0098 -1.0001 0.2329 25 1 4.9685 1.4276 -0.0234 26 1 5.0433 1.7828 1.7189 27 1 5.1154 0.0975 1.1503 28 1 3.4296 3.0519 2.0867 29 1 3.3097 4.7411 3.8494 30 1 -0.1001 3.2365 7.9673 31 1 1.8116 1.7558 6.5743 32 1 1.9524 0.0832 4.7972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:51 Heat of formation + Delta-G solvation = 24.799985 kcal Electronic energy + Delta-G solvation = -15095.631092 eV Core-core repulsion = 12601.582978 eV Total energy + Delta-G solvation = -2494.048114 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11416 -36.72838 -34.30014 -33.13003 -31.51770 -29.53830 -28.97142 -27.20104 -24.85429 -22.32714 -20.77679 -20.11935 -18.02023 -17.36222 -17.09342 -15.20343 -14.89428 -14.78691 -13.95714 -13.81196 -13.44824 -13.05910 -12.67537 -12.42391 -12.17276 -11.81381 -11.72480 -11.30144 -11.24457 -11.03036 -10.77400 -10.53834 -10.02758 -9.97804 -9.80812 -9.70357 -9.26220 -9.04075 -7.60520 -6.91954 -6.63473 -4.23728 2.81782 2.98077 3.01184 3.06030 3.11058 3.15328 3.23176 3.99408 4.12310 4.53024 4.69850 5.15401 5.31196 5.38795 5.63310 5.69232 5.77403 5.88174 6.08143 6.10501 6.16785 6.27594 6.41618 6.77697 7.01472 7.15819 7.24189 7.51140 7.60373 7.82148 7.85099 8.04857 8.25084 8.50224 8.70033 8.95233 9.02696 10.31551 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.005767 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.169440 B = 4853.818628 C = 5175.234636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C -0.007 4.007 4 C 0.091 3.909 5 H 0.069 0.931 6 C -0.178 4.178 7 O -0.319 6.319 8 C 0.003 3.997 9 C -0.173 4.173 10 C -0.192 4.192 11 C 0.085 3.915 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.809 5.809 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.126 4.126 21 C -0.125 4.125 22 H 0.215 0.785 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.278 0.722 31 H 0.127 0.873 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 -3.692 -8.913 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.179 4.179 3 C -0.043 4.043 4 C 0.034 3.966 5 H 0.087 0.913 6 C -0.235 4.235 7 O -0.235 6.235 8 C -0.040 4.040 9 C -0.192 4.192 10 C -0.212 4.212 11 C 0.083 3.917 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.437 5.437 16 Si 0.734 3.266 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.145 4.145 21 C -0.144 4.144 22 H 0.232 0.768 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.579 -3.969 -8.761 9.958 hybrid contribution -0.287 0.758 0.596 1.006 sum 2.292 -3.210 -8.166 9.068 Atomic orbital electron populations 1.24820 0.95921 1.00907 1.01223 1.22915 0.94419 1.00490 1.00077 1.18842 0.85388 1.01354 0.98712 1.22025 0.94249 0.97400 0.82965 0.91339 1.22366 0.95713 1.03190 1.02248 1.85903 1.85898 1.35277 1.16446 1.18612 1.08478 0.88046 0.88891 1.20458 1.06882 0.93162 0.98682 1.20623 1.09921 0.97242 0.93409 1.17608 0.90434 0.92347 0.91323 1.19429 1.15378 1.08098 1.06672 0.90731 1.25844 0.94051 0.95446 0.98966 1.69796 1.10542 1.30790 1.32542 0.86300 0.79518 0.80191 0.80569 1.19671 1.20239 1.18665 1.21020 1.02950 0.92140 0.98383 1.19866 1.04171 0.98982 0.91389 0.76836 0.88396 0.88912 0.91883 0.91141 0.91792 0.88518 0.88764 0.91095 0.85553 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.09 19.25 29.55 0.57 -2.52 16 2 C -0.18 -2.77 13.10 -37.12 -0.49 -3.26 16 3 C -0.01 -0.09 5.42 -29.52 -0.16 -0.25 16 4 C 0.09 1.46 2.20 -26.73 -0.06 1.40 16 5 H 0.07 1.16 6.35 -51.93 -0.33 0.83 16 6 C -0.18 -2.39 9.13 37.16 0.34 -2.05 16 7 O -0.32 -6.61 9.53 -18.73 -0.18 -6.78 16 8 C 0.00 0.07 6.61 -38.78 -0.26 -0.19 16 9 C -0.17 -3.95 8.10 -39.83 -0.32 -4.27 16 10 C -0.19 -4.78 9.74 -39.25 -0.38 -5.16 16 11 C 0.09 2.31 5.55 -106.80 -0.59 1.71 16 12 C -0.47 -12.53 9.05 -37.83 -0.34 -12.88 16 13 H 0.07 1.93 7.87 -52.49 -0.41 1.51 16 14 C 0.07 1.85 5.24 -17.34 -0.09 1.76 16 15 N -0.81 -21.43 10.86 55.54 0.60 -20.83 16 16 Si 0.91 19.06 29.57 -169.99 -5.03 14.03 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.13 -3.34 8.61 -39.25 -0.34 -3.67 16 21 C -0.13 -3.10 9.92 -39.83 -0.40 -3.49 16 22 H 0.21 2.36 7.80 -54.08 -0.42 1.94 16 23 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.92 5.36 -52.49 -0.28 1.64 16 29 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.13 3.44 6.23 -52.49 -0.33 3.12 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 280.56 15.07 4.23 4.23 Total: -1.00 -29.50 280.56 -6.69 -36.18 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.80 Total: 6.04 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: -2.52 Total: -32.87 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.60 Total: -20.83 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.18 Total: -6.78 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.50 -6.69 -36.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.983 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds