Wall clock time and date at job start Sun Mar 29 2020 22:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47030 * 226.90471 * 3 2 1 5 5 H 1.09002 * 109.46809 * 305.00138 * 4 3 2 6 6 C 1.52997 * 109.47275 * 185.00107 * 4 3 2 7 7 O 1.42901 * 109.47178 * 64.99904 * 4 3 2 8 8 C 1.35675 * 116.99728 * 203.24127 * 7 4 3 9 9 C 1.39314 * 119.81987 * 355.51748 * 8 7 4 10 10 C 1.36435 * 120.18389 * 180.25735 * 9 8 7 11 11 C 1.40840 * 119.81181 * 359.47266 * 10 9 8 12 12 C 1.41213 * 120.18007 * 180.30145 * 11 10 9 13 13 H 1.08000 * 119.99779 * 331.09335 * 12 11 10 14 14 C 1.39891 * 119.99920 * 151.09980 * 12 11 10 15 15 N 1.30880 * 120.00378 * 348.97864 * 14 12 11 16 16 Si 1.86803 * 119.99742 * 168.97760 * 14 12 11 17 17 H 1.48499 * 109.46915 * 89.99978 * 16 14 12 18 18 H 1.48496 * 109.47259 * 209.99630 * 16 14 12 19 19 H 1.48501 * 109.47150 * 330.00404 * 16 14 12 20 20 C 1.40838 * 119.64130 * 0.27580 * 11 10 9 21 21 C 1.36444 * 119.80833 * 0.02562 * 20 11 10 22 22 H 4.44648 * 5.63399 * 179.97438 * 4 1 2 23 23 H 1.09004 * 109.47439 * 106.90275 * 3 2 1 24 24 H 1.08999 * 109.47306 * 346.90002 * 3 2 1 25 25 H 1.09009 * 109.47070 * 59.99836 * 6 4 3 26 26 H 1.08996 * 109.47617 * 179.97438 * 6 4 3 27 27 H 1.09002 * 109.47237 * 300.00332 * 6 4 3 28 28 H 1.07998 * 119.90897 * 0.02697 * 9 8 7 29 29 H 1.07997 * 120.09705 * 179.74532 * 10 9 8 30 30 H 0.96990 * 120.00120 * 180.02562 * 15 14 12 31 31 H 1.07996 * 120.09473 * 180.02562 * 20 11 10 32 32 H 1.07999 * 119.90371 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9864 1.0534 5 1 2.7204 1.9692 0.8718 6 6 4.6803 1.0802 0.9688 7 8 2.7777 0.5312 2.3541 8 6 2.7033 1.4646 3.3359 9 6 3.0801 2.7796 3.0715 10 6 3.0133 3.7231 4.0547 11 6 2.5513 3.3671 5.3367 12 6 2.4729 4.3389 6.3582 13 1 3.1505 5.1799 6.3566 14 6 1.5177 4.2121 7.3724 15 7 0.5623 3.3241 7.2643 16 14 1.6058 5.3103 8.8809 17 1 0.8219 6.5480 8.6386 18 1 1.0438 4.5897 10.0514 19 1 3.0218 5.6664 9.1520 20 6 2.1673 2.0367 5.5940 21 6 2.2461 1.1039 4.6014 22 1 -1.0501 0.0000 -0.0003 23 1 3.0093 0.2996 -0.9833 24 1 3.0098 -1.0001 0.2329 25 1 4.9685 1.4276 -0.0234 26 1 5.0433 1.7828 1.7189 27 1 5.1154 0.0975 1.1503 28 1 3.4296 3.0519 2.0867 29 1 3.3097 4.7411 3.8494 30 1 -0.1001 3.2365 7.9673 31 1 1.8116 1.7558 6.5743 32 1 1.9524 0.0832 4.7972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:51 Heat of formation + Delta-G solvation = 9.380937 kcal Electronic energy + Delta-G solvation = -15096.299712 eV Core-core repulsion = 12601.582978 eV Total energy + Delta-G solvation = -2494.716734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76373 -38.47973 -35.71768 -34.87819 -32.78487 -31.39996 -30.86948 -28.27984 -26.75906 -23.89915 -22.66045 -21.72559 -19.36757 -18.98951 -18.76646 -17.04539 -16.46672 -16.10782 -15.74748 -15.23448 -14.88177 -14.49673 -14.21067 -14.07381 -13.70158 -13.49213 -13.03995 -12.92926 -12.86391 -12.74873 -12.39343 -12.05615 -11.69768 -11.52911 -11.21281 -11.09330 -10.95801 -10.87193 -9.55260 -8.83635 -8.54067 -6.24321 0.95797 1.03186 1.40088 1.50787 1.55026 1.86174 1.93725 2.24441 2.64063 2.78686 3.50644 3.69721 4.00254 4.13222 4.24348 4.33459 4.37281 4.67422 4.73881 4.81389 4.92632 4.98613 5.08983 5.16185 5.23406 5.31145 5.35635 5.61007 5.67042 5.89521 6.07162 6.27900 6.58703 6.73259 6.83701 6.97395 7.11579 8.42927 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.005767 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.169440 B = 4853.818628 C = 5175.234636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.212 4.212 3 C -0.003 4.003 4 C 0.080 3.920 5 H 0.059 0.941 6 C -0.172 4.172 7 O -0.331 6.331 8 C 0.015 3.985 9 C -0.170 4.170 10 C -0.201 4.201 11 C 0.050 3.950 12 C -0.500 4.500 13 H 0.075 0.925 14 C 0.029 3.971 15 N -0.843 5.843 16 Si 0.985 3.015 17 H -0.264 1.264 18 H -0.269 1.269 19 H -0.259 1.259 20 C -0.144 4.144 21 C -0.141 4.141 22 H 0.238 0.762 23 H 0.138 0.862 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.285 0.715 31 H 0.110 0.890 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -3.537 -10.205 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.212 4.212 3 C -0.039 4.039 4 C 0.023 3.977 5 H 0.077 0.923 6 C -0.229 4.229 7 O -0.247 6.247 8 C -0.029 4.029 9 C -0.188 4.188 10 C -0.221 4.221 11 C 0.049 3.951 12 C -0.531 4.531 13 H 0.093 0.907 14 C -0.183 4.183 15 N -0.471 5.471 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.193 1.193 19 H -0.182 1.182 20 C -0.163 4.163 21 C -0.160 4.160 22 H 0.255 0.745 23 H 0.155 0.845 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.208 -3.826 -10.083 11.251 hybrid contribution -0.480 0.608 0.800 1.114 sum 2.728 -3.218 -9.282 10.196 Atomic orbital electron populations 1.25656 0.97091 1.00313 1.00705 1.23675 0.95733 1.01133 1.00686 1.19006 0.84193 1.01228 0.99469 1.22451 0.96155 0.97887 0.81162 0.92256 1.22332 0.93363 1.03366 1.03857 1.85895 1.85878 1.35053 1.17897 1.18665 1.06491 0.88655 0.89117 1.20741 1.05877 0.92538 0.99656 1.20868 1.09653 0.98365 0.93187 1.17964 0.91784 0.92764 0.92634 1.19693 1.16528 1.08668 1.08198 0.90665 1.26730 0.93076 0.96847 1.01636 1.69870 1.11219 1.32313 1.33726 0.85162 0.79642 0.78180 0.76418 1.18877 1.19310 1.18231 1.20927 1.04339 0.92711 0.98339 1.20030 1.04672 0.99206 0.92085 0.74526 0.84481 0.87867 0.88127 0.93141 0.90970 0.85279 0.87613 0.90467 0.87215 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.11 19.25 74.32 1.43 -4.67 16 2 C -0.21 -6.16 13.10 31.12 0.41 -5.75 16 3 C 0.00 -0.07 5.42 28.79 0.16 0.09 16 4 C 0.08 2.35 2.20 30.59 0.07 2.41 16 5 H 0.06 1.86 6.35 -2.39 -0.02 1.84 16 6 C -0.17 -4.05 9.13 71.98 0.66 -3.39 16 7 O -0.33 -13.25 9.53 -89.92 -0.86 -14.10 16 8 C 0.01 0.68 6.61 22.79 0.15 0.83 16 9 C -0.17 -7.60 8.10 22.11 0.18 -7.42 16 10 C -0.20 -10.05 9.74 22.49 0.22 -9.84 16 11 C 0.05 2.82 5.55 -21.28 -0.12 2.70 16 12 C -0.50 -27.66 9.05 23.40 0.21 -27.45 16 13 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 14 C 0.03 1.52 5.24 85.24 0.45 1.96 16 15 N -0.84 -45.81 10.86 21.82 0.24 -45.57 16 16 Si 0.99 39.34 29.57 68.60 2.03 41.37 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 C -0.14 -7.91 8.61 22.49 0.19 -7.72 16 21 C -0.14 -7.11 9.92 22.11 0.22 -6.89 16 22 H 0.24 4.84 7.80 -4.41 -0.03 4.80 16 23 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 25 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.05 1.40 6.77 -2.39 -0.02 1.38 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.13 4.85 5.36 -2.91 -0.02 4.83 16 29 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 30 H 0.28 14.05 8.30 -92.72 -0.77 13.28 16 31 H 0.11 6.29 6.23 -2.91 -0.02 6.27 16 32 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -64.87 280.56 6.73 -58.13 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 1.10 Total: 25.31 kcal Atomic # 6 Polarization: -69.35 SS G_CDS: 4.22 Total: -65.13 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.24 Total: -45.57 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.86 Total: -14.10 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -64.87 6.73 -58.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.513 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds