Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47125 * 164.90462 * 3 2 1 5 5 C 1.53001 * 109.46877 * 44.90346 * 3 2 1 6 6 C 1.53001 * 109.46700 * 174.99898 * 5 3 2 7 7 O 1.42902 * 109.47144 * 284.90132 * 3 2 1 8 8 C 1.35675 * 117.00245 * 274.82091 * 7 3 2 9 9 C 1.39314 * 119.81612 * 5.23488 * 8 7 3 10 10 C 1.36436 * 120.18232 * 179.97438 * 9 8 7 11 11 C 1.40829 * 119.81285 * 0.02562 * 10 9 8 12 12 C 1.41209 * 120.17825 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00137 * 336.79144 * 12 11 10 14 14 C 1.39895 * 120.00151 * 156.79277 * 12 11 10 15 15 N 1.30882 * 119.99455 * 338.41240 * 14 12 11 16 16 Si 1.86793 * 120.00354 * 158.41895 * 14 12 11 17 17 H 1.48497 * 109.47350 * 94.98261 * 16 14 12 18 18 H 1.48496 * 109.47149 * 214.98787 * 16 14 12 19 19 H 1.48507 * 109.47116 * 334.98231 * 16 14 12 20 20 C 1.40833 * 119.64386 * 0.25832 * 11 10 9 21 21 C 1.36442 * 119.80672 * 359.45554 * 20 11 10 22 22 H 4.18745 * 15.04026 * 0.02562 * 4 2 1 23 23 H 1.08997 * 109.46830 * 294.99631 * 5 3 2 24 24 H 1.08993 * 109.46926 * 55.00156 * 5 3 2 25 25 H 1.09003 * 109.47619 * 60.00036 * 6 5 3 26 26 H 1.09001 * 109.47136 * 179.97438 * 6 5 3 27 27 H 1.09004 * 109.47720 * 299.99981 * 6 5 3 28 28 H 1.08007 * 119.90896 * 0.02715 * 9 8 7 29 29 H 1.08002 * 120.09008 * 179.97438 * 10 9 8 30 30 H 0.97003 * 119.99812 * 179.97438 * 15 14 12 31 31 H 1.07999 * 120.09927 * 179.72296 * 20 11 10 32 32 H 1.08004 * 119.90383 * 180.27910 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9931 -0.2676 5 6 3.1564 -1.0209 -1.0183 6 6 4.6812 -0.9327 -1.1086 7 8 3.1225 -0.3456 1.3020 8 6 3.2316 0.6605 2.2057 9 6 2.7825 1.9378 1.8778 10 6 2.8881 2.9549 2.7811 11 6 3.4534 2.7106 4.0476 12 6 3.5670 3.7577 4.9882 13 1 3.5850 4.7845 4.6537 14 6 3.6561 3.4652 6.3533 15 7 3.2232 2.3159 6.8058 16 14 4.3928 4.7147 7.5302 17 1 3.3058 5.5247 8.1364 18 1 5.1384 4.0063 8.6013 19 1 5.3200 5.6067 6.7885 20 6 3.9104 1.4178 4.3689 21 6 3.7921 0.4104 3.4563 22 1 -1.0501 -0.0008 0.0007 23 1 2.8685 -2.0236 -0.7025 24 1 2.7217 -0.8086 -1.9950 25 1 5.1160 -1.1449 -0.1319 26 1 5.0449 -1.6607 -1.8337 27 1 4.9691 0.0701 -1.4243 28 1 2.3488 2.1233 0.9062 29 1 2.5399 3.9447 2.5252 30 1 3.2853 2.1129 7.7523 31 1 4.3492 1.2233 5.3363 32 1 4.1379 -0.5826 3.7027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = 26.224929 kcal Electronic energy + Delta-G solvation = -15096.221376 eV Core-core repulsion = 12602.235052 eV Total energy + Delta-G solvation = -2493.986324 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12604 -36.76573 -34.13597 -33.09399 -32.02319 -29.71697 -29.00993 -26.69734 -24.72430 -22.16374 -20.72111 -20.63672 -18.26653 -17.39002 -17.06482 -15.22997 -15.17897 -14.75667 -14.08748 -13.93994 -13.26560 -12.82797 -12.69153 -12.28996 -12.07544 -11.68472 -11.55366 -11.30848 -11.06043 -10.90186 -10.88401 -10.70025 -10.33450 -10.07424 -9.87554 -9.82817 -9.29288 -8.98136 -7.62371 -7.05732 -6.74889 -4.23568 2.78180 2.91067 2.95301 3.06296 3.08774 3.12465 3.22595 3.95199 4.28380 4.48478 4.63266 5.14733 5.21615 5.41927 5.62978 5.69255 5.91116 5.96239 6.12282 6.14549 6.18116 6.25585 6.41588 6.74670 6.99383 7.12681 7.19253 7.46895 7.56750 7.81827 7.82404 8.01290 8.20755 8.44879 8.65415 8.90061 8.99761 10.19876 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.045160 B = 0.005775 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.874786 B = 4847.402184 C = 5041.125997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.199 4.199 3 C 0.196 3.804 4 H 0.088 0.912 5 C -0.110 4.110 6 C -0.151 4.151 7 O -0.309 6.309 8 C -0.015 4.015 9 C -0.161 4.161 10 C -0.200 4.200 11 C 0.091 3.909 12 C -0.465 4.465 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.139 4.139 21 C -0.115 4.115 22 H 0.216 0.784 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.280 0.720 31 H 0.122 0.878 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -3.486 -9.092 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.199 4.199 3 C 0.139 3.861 4 H 0.105 0.895 5 C -0.147 4.147 6 C -0.208 4.208 7 O -0.225 6.225 8 C -0.058 4.058 9 C -0.179 4.179 10 C -0.219 4.219 11 C 0.088 3.912 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.140 4.140 15 N -0.419 5.419 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.158 4.158 21 C -0.134 4.134 22 H 0.233 0.767 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.138 -3.814 -8.832 9.621 hybrid contribution -0.235 0.762 0.593 0.994 sum -0.096 -3.052 -8.238 8.786 Atomic orbital electron populations 1.24894 0.95858 1.01276 0.99400 1.23918 0.95223 0.99964 1.00817 1.19034 0.82789 0.99697 0.84559 0.89494 1.21531 0.96871 0.99332 0.97007 1.21738 0.94824 1.01604 1.02655 1.85973 1.81954 1.34715 1.19845 1.18579 1.09430 0.86855 0.90938 1.20412 1.05057 0.93308 0.99146 1.20536 1.07704 0.97405 0.96294 1.17583 0.89179 0.92921 0.91479 1.19452 1.45059 0.94382 0.90533 0.90491 1.25886 0.92752 0.95960 0.99402 1.69870 1.32937 1.22957 1.16119 0.86375 0.80042 0.81127 0.79639 1.19659 1.20029 1.18417 1.20894 1.03194 0.92912 0.98831 1.19803 1.03117 0.98771 0.91708 0.76720 0.90892 0.90570 0.91420 0.92653 0.92675 0.88800 0.88787 0.90883 0.85988 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 19.25 29.55 0.57 -2.45 16 2 C -0.20 -3.44 11.97 -37.12 -0.44 -3.88 16 3 C 0.20 3.34 2.11 -29.52 -0.06 3.28 16 4 H 0.09 1.46 6.27 -51.93 -0.33 1.14 16 5 C -0.11 -1.45 5.60 -26.73 -0.15 -1.60 16 6 C -0.15 -1.84 9.81 37.16 0.36 -1.47 16 7 O -0.31 -6.46 9.29 -18.73 -0.17 -6.63 16 8 C -0.02 -0.36 6.61 -38.78 -0.26 -0.61 16 9 C -0.16 -3.75 8.63 -39.83 -0.34 -4.09 16 10 C -0.20 -5.02 9.74 -39.25 -0.38 -5.40 16 11 C 0.09 2.46 5.57 -106.81 -0.60 1.86 16 12 C -0.46 -12.44 9.02 -37.83 -0.34 -12.78 16 13 H 0.08 1.98 7.93 -52.49 -0.42 1.56 16 14 C 0.08 1.96 5.06 -17.34 -0.09 1.88 16 15 N -0.79 -20.71 11.12 55.55 0.62 -20.09 16 16 Si 0.90 18.69 29.61 -169.99 -5.03 13.65 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.14 -3.67 8.66 -39.25 -0.34 -4.01 16 21 C -0.12 -2.83 9.92 -39.83 -0.40 -3.22 16 22 H 0.22 2.39 7.80 -54.09 -0.42 1.97 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.97 5.65 -52.48 -0.30 1.68 16 29 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.12 3.27 6.22 -52.49 -0.33 2.95 16 32 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 281.97 15.07 4.25 4.25 Total: -1.00 -28.90 281.97 -6.67 -35.57 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.86 Total: 5.75 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -2.47 Total: -32.50 kcal Atomic # 7 Polarization: -20.71 SS G_CDS: 0.62 Total: -20.09 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.17 Total: -6.63 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.90 -6.67 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds