Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47125 * 164.90462 * 3 2 1 5 5 C 1.53001 * 109.46877 * 44.90346 * 3 2 1 6 6 C 1.53001 * 109.46700 * 174.99898 * 5 3 2 7 7 O 1.42902 * 109.47144 * 284.90132 * 3 2 1 8 8 C 1.35675 * 117.00245 * 274.82091 * 7 3 2 9 9 C 1.39314 * 119.81612 * 5.23488 * 8 7 3 10 10 C 1.36436 * 120.18232 * 179.97438 * 9 8 7 11 11 C 1.40829 * 119.81285 * 0.02562 * 10 9 8 12 12 C 1.41209 * 120.17825 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00137 * 336.79144 * 12 11 10 14 14 C 1.39895 * 120.00151 * 156.79277 * 12 11 10 15 15 N 1.30882 * 119.99455 * 338.41240 * 14 12 11 16 16 Si 1.86793 * 120.00354 * 158.41895 * 14 12 11 17 17 H 1.48497 * 109.47350 * 94.98261 * 16 14 12 18 18 H 1.48496 * 109.47149 * 214.98787 * 16 14 12 19 19 H 1.48507 * 109.47116 * 334.98231 * 16 14 12 20 20 C 1.40833 * 119.64386 * 0.25832 * 11 10 9 21 21 C 1.36442 * 119.80672 * 359.45554 * 20 11 10 22 22 H 4.18745 * 15.04026 * 0.02562 * 4 2 1 23 23 H 1.08997 * 109.46830 * 294.99631 * 5 3 2 24 24 H 1.08993 * 109.46926 * 55.00156 * 5 3 2 25 25 H 1.09003 * 109.47619 * 60.00036 * 6 5 3 26 26 H 1.09001 * 109.47136 * 179.97438 * 6 5 3 27 27 H 1.09004 * 109.47720 * 299.99981 * 6 5 3 28 28 H 1.08007 * 119.90896 * 0.02715 * 9 8 7 29 29 H 1.08002 * 120.09008 * 179.97438 * 10 9 8 30 30 H 0.97003 * 119.99812 * 179.97438 * 15 14 12 31 31 H 1.07999 * 120.09927 * 179.72296 * 20 11 10 32 32 H 1.08004 * 119.90383 * 180.27910 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9931 -0.2676 5 6 3.1564 -1.0209 -1.0183 6 6 4.6812 -0.9327 -1.1086 7 8 3.1225 -0.3456 1.3020 8 6 3.2316 0.6605 2.2057 9 6 2.7825 1.9378 1.8778 10 6 2.8881 2.9549 2.7811 11 6 3.4534 2.7106 4.0476 12 6 3.5670 3.7577 4.9882 13 1 3.5850 4.7845 4.6537 14 6 3.6561 3.4652 6.3533 15 7 3.2232 2.3159 6.8058 16 14 4.3928 4.7147 7.5302 17 1 3.3058 5.5247 8.1364 18 1 5.1384 4.0063 8.6013 19 1 5.3200 5.6067 6.7885 20 6 3.9104 1.4178 4.3689 21 6 3.7921 0.4104 3.4563 22 1 -1.0501 -0.0008 0.0007 23 1 2.8685 -2.0236 -0.7025 24 1 2.7217 -0.8086 -1.9950 25 1 5.1160 -1.1449 -0.1319 26 1 5.0449 -1.6607 -1.8337 27 1 4.9691 0.0701 -1.4243 28 1 2.3488 2.1233 0.9062 29 1 2.5399 3.9447 2.5252 30 1 3.2853 2.1129 7.7523 31 1 4.3492 1.2233 5.3363 32 1 4.1379 -0.5826 3.7027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = 11.549260 kcal Electronic energy + Delta-G solvation = -15096.857761 eV Core-core repulsion = 12602.235052 eV Total energy + Delta-G solvation = -2494.622709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79491 -38.53587 -35.68096 -34.79230 -33.17337 -31.62807 -30.91984 -27.99749 -26.59033 -23.60985 -22.60520 -22.17063 -19.67577 -19.27777 -18.65198 -17.06330 -16.54940 -16.31824 -15.77401 -15.34244 -14.74997 -14.49942 -14.19357 -14.10728 -13.83410 -13.26422 -13.00468 -12.80346 -12.59051 -12.40690 -12.35657 -12.02542 -11.82280 -11.71780 -11.58256 -11.25467 -10.98532 -10.86285 -9.57982 -8.98581 -8.63848 -6.22968 0.93711 1.00384 1.39836 1.49502 1.56732 1.60380 1.80769 2.22500 2.69144 2.84437 3.34270 3.69010 3.98424 4.05196 4.28805 4.32492 4.37939 4.53827 4.83593 4.88168 5.00415 5.04397 5.05869 5.15813 5.21722 5.27563 5.42403 5.56308 5.63428 5.88081 6.03735 6.24259 6.54096 6.60067 6.77323 6.92929 7.07164 8.33604 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.045160 B = 0.005775 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.874786 B = 4847.402184 C = 5041.125997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.251 4.251 3 C 0.187 3.813 4 H 0.086 0.914 5 C -0.103 4.103 6 C -0.150 4.150 7 O -0.318 6.318 8 C -0.005 4.005 9 C -0.159 4.159 10 C -0.212 4.212 11 C 0.059 3.941 12 C -0.501 4.501 13 H 0.077 0.923 14 C 0.037 3.963 15 N -0.826 5.826 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.258 1.258 20 C -0.156 4.156 21 C -0.127 4.127 22 H 0.253 0.747 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.289 0.711 31 H 0.109 0.891 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -3.465 -10.058 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.252 4.252 3 C 0.131 3.869 4 H 0.104 0.896 5 C -0.140 4.140 6 C -0.207 4.207 7 O -0.234 6.234 8 C -0.049 4.049 9 C -0.178 4.178 10 C -0.231 4.231 11 C 0.057 3.943 12 C -0.530 4.530 13 H 0.095 0.905 14 C -0.178 4.178 15 N -0.453 5.453 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.182 1.182 20 C -0.176 4.176 21 C -0.146 4.146 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.318 -3.807 -9.824 10.541 hybrid contribution -0.201 0.651 0.738 1.004 sum -0.519 -3.156 -9.086 9.633 Atomic orbital electron populations 1.25846 0.96817 0.99172 0.96982 1.24184 0.95931 1.02026 1.03042 1.19406 0.83341 1.00998 0.83149 0.89611 1.21576 0.97434 0.98083 0.96939 1.21741 0.94118 1.02680 1.02154 1.85962 1.82093 1.34049 1.21280 1.18648 1.07683 0.87474 0.91069 1.20625 1.04522 0.92809 0.99817 1.20752 1.07764 0.98420 0.96183 1.17935 0.90241 0.93502 0.92655 1.19707 1.47138 0.94374 0.91763 0.90520 1.26756 0.92314 0.98075 1.00624 1.69913 1.33474 1.24793 1.17071 0.85219 0.79183 0.78330 0.77133 1.18737 1.19000 1.18213 1.20837 1.04313 0.93514 0.98891 1.19991 1.03385 0.99057 0.92193 0.73120 0.90988 0.87896 0.93683 0.90039 0.92308 0.86392 0.87872 0.90040 0.87298 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 19.25 74.32 1.43 -3.32 16 2 C -0.25 -8.20 11.97 31.12 0.37 -7.83 16 3 C 0.19 6.12 2.11 28.79 0.06 6.18 16 4 H 0.09 2.78 6.27 -2.38 -0.01 2.76 16 5 C -0.10 -2.50 5.60 30.59 0.17 -2.33 16 6 C -0.15 -3.37 9.81 71.98 0.71 -2.67 16 7 O -0.32 -13.09 9.29 -89.93 -0.84 -13.93 16 8 C -0.01 -0.24 6.61 22.79 0.15 -0.09 16 9 C -0.16 -7.39 8.63 22.11 0.19 -7.20 16 10 C -0.21 -10.76 9.74 22.48 0.22 -10.54 16 11 C 0.06 3.27 5.57 -21.28 -0.12 3.16 16 12 C -0.50 -27.45 9.02 23.40 0.21 -27.24 16 13 H 0.08 4.04 7.93 -2.91 -0.02 4.02 16 14 C 0.04 1.90 5.06 85.24 0.43 2.33 16 15 N -0.83 -43.93 11.12 21.82 0.24 -43.69 16 16 Si 0.98 38.40 29.61 68.60 2.03 40.44 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 20 C -0.16 -8.50 8.66 22.49 0.19 -8.31 16 21 C -0.13 -6.37 9.92 22.11 0.22 -6.15 16 22 H 0.25 4.57 7.80 -4.41 -0.03 4.53 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.21 7.82 -2.39 -0.02 1.19 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 4.82 5.65 -2.91 -0.02 4.80 16 29 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 30 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 31 H 0.11 6.10 6.22 -2.91 -0.02 6.08 16 32 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -62.88 281.97 6.78 -56.10 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 1.10 Total: 25.10 kcal Atomic # 6 Polarization: -68.25 SS G_CDS: 4.24 Total: -64.01 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.24 Total: -43.69 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.84 Total: -13.93 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.44 kcal Total: -62.88 6.78 -56.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.648 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds