Wall clock time and date at job start Sun Mar 29 2020 22:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48497 * 109.47135 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46988 * 119.99377 * 3 2 1 6 6 H 1.48493 * 109.47276 * 239.99487 * 3 2 1 7 7 C 1.39887 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 149.20249 * 7 2 1 9 9 C 1.41213 * 120.00075 * 329.20295 * 7 2 1 10 10 C 1.40836 * 120.18250 * 337.01807 * 9 7 2 11 11 C 1.36434 * 119.81368 * 179.73896 * 10 9 7 12 12 C 1.39313 * 120.18301 * 0.51698 * 11 10 9 13 13 O 1.35680 * 119.81513 * 179.73770 * 12 11 10 14 14 C 1.42897 * 116.99757 * 175.45488 * 13 12 11 15 15 H 1.09003 * 110.35115 * 325.87544 * 14 13 12 16 16 C 1.51103 * 110.38840 * 88.28566 * 14 13 12 17 17 C 1.30525 * 111.10065 * 135.24324 * 16 14 13 18 18 C 1.51101 * 111.10948 * 0.02562 * 17 16 14 19 19 C 1.54634 * 104.72254 * 343.55695 * 18 17 16 20 20 C 1.39311 * 120.36805 * 359.75816 * 12 11 10 21 21 C 1.36443 * 120.18055 * 359.97438 * 20 12 11 22 22 H 0.96998 * 119.99830 * 173.02218 * 1 2 3 23 23 H 1.08007 * 120.08802 * 359.97210 * 10 9 7 24 24 H 1.08000 * 119.90472 * 180.25284 * 11 10 9 25 25 H 1.07993 * 124.44455 * 315.23288 * 16 14 13 26 26 H 1.08005 * 124.44173 * 180.02562 * 17 16 14 27 27 H 1.09001 * 110.38439 * 224.74780 * 18 17 16 28 28 H 1.08994 * 110.48598 * 102.42086 * 18 17 16 29 29 H 1.09000 * 111.03997 * 266.60531 * 19 18 17 30 30 H 1.09000 * 111.03685 * 142.66541 * 19 18 17 31 31 H 1.07994 * 119.91000 * 180.02562 * 20 12 11 32 32 H 1.08001 * 120.08775 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0965 1.6964 1.2126 6 1 3.0967 1.6964 -1.2124 7 6 2.0083 -1.2115 0.0005 8 1 2.9740 -1.2776 -0.4783 9 6 1.4516 -2.3479 0.6272 10 6 0.4810 -2.1958 1.6363 11 6 -0.0557 -3.2991 2.2330 12 6 0.3616 -4.5732 1.8542 13 8 -0.1734 -5.6651 2.4562 14 6 0.2232 -6.9426 1.9536 15 1 0.3849 -6.8927 0.8767 16 6 1.4742 -7.4189 2.6546 17 6 1.3723 -8.6746 2.9959 18 6 0.0368 -9.2453 2.5790 19 6 -0.8453 -8.0090 2.2881 20 6 1.3253 -4.7323 0.8609 21 6 1.8681 -3.6394 0.2504 22 1 -0.4850 -0.8338 -0.1021 23 1 0.1598 -1.2086 1.9343 24 1 -0.8031 -3.1843 3.0041 25 1 2.3389 -6.8015 2.8476 26 1 2.1417 -9.2325 3.5091 27 1 -0.3927 -9.8364 3.3879 28 1 0.1455 -9.8539 1.6814 29 1 -1.4208 -7.7230 3.1686 30 1 -1.5004 -8.1876 1.4355 31 1 1.6431 -5.7233 0.5727 32 1 2.6155 -3.7644 -0.5191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:17 Heat of formation + Delta-G solvation = -23.551897 kcal Electronic energy + Delta-G solvation = -15169.715186 eV Core-core repulsion = 12673.570377 eV Total energy + Delta-G solvation = -2496.144809 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04040 -39.27071 -37.44987 -35.29391 -31.84897 -30.80078 -29.96690 -28.45689 -26.46872 -23.45838 -22.77525 -21.49965 -20.02445 -19.86321 -18.79016 -17.45273 -16.46589 -16.39000 -15.68253 -15.52767 -15.17251 -14.79473 -14.52021 -13.97877 -13.47760 -13.17263 -13.09752 -12.82642 -12.73693 -12.61340 -12.34768 -12.15854 -11.96860 -11.70325 -11.41206 -11.38405 -10.76205 -9.98653 -9.77923 -9.27856 -9.03101 -6.33172 0.81499 0.87955 1.17831 1.51577 1.63688 1.81590 2.33998 2.60271 2.71918 3.48413 3.60477 3.67084 4.01051 4.17715 4.20805 4.31453 4.41953 4.52053 4.69485 4.83572 4.88114 4.90735 5.04430 5.10699 5.18977 5.35679 5.44806 5.48544 5.68818 5.73348 5.81414 5.84465 6.16268 6.22660 6.62827 6.87222 6.99935 8.00882 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.070273 B = 0.005306 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.350884 B = 5275.704620 C = 5460.567716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.009 3.991 3 Si 1.114 2.886 4 H -0.270 1.270 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.049 3.951 10 C -0.206 4.206 11 C -0.114 4.114 12 C -0.011 4.011 13 O -0.328 6.328 14 C 0.094 3.906 15 H 0.070 0.930 16 C -0.216 4.216 17 C -0.137 4.137 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.149 4.149 21 C -0.215 4.215 22 H 0.281 0.719 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.151 0.849 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -12.742 3.237 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.208 4.208 3 Si 0.931 3.069 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.591 4.591 8 H 0.090 0.910 9 C 0.047 3.953 10 C -0.226 4.226 11 C -0.132 4.132 12 C -0.055 4.055 13 O -0.244 6.244 14 C 0.038 3.962 15 H 0.088 0.912 16 C -0.234 4.234 17 C -0.154 4.154 18 C -0.131 4.131 19 C -0.155 4.155 20 C -0.168 4.168 21 C -0.234 4.234 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.168 0.832 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.410 -11.135 3.449 11.664 hybrid contribution 0.372 -1.466 -0.330 1.548 sum 0.782 -12.601 3.119 13.005 Atomic orbital electron populations 1.70596 1.09070 1.32995 1.30678 1.28412 0.95520 1.07418 0.89456 0.83058 0.74889 0.69859 0.79103 1.19494 1.19036 1.18069 1.20606 1.06524 0.96510 1.35494 0.91037 1.17950 0.92269 0.93421 0.91707 1.20677 1.04472 0.96745 1.00678 1.19931 1.01457 0.90304 1.01535 1.18606 1.00400 0.86545 0.99901 1.85925 1.67378 1.12882 1.58194 1.22483 0.94168 0.81925 0.97668 0.91201 1.23668 0.98886 0.98211 1.02632 1.23565 0.99346 0.95200 0.97315 1.21416 0.91872 0.96708 1.03095 1.22658 0.96861 0.92713 1.03231 1.20727 0.98885 0.98676 0.98488 1.20727 1.06305 0.92219 1.04170 0.90703 0.88505 0.86971 0.87210 0.83169 0.88435 0.88326 0.90324 0.88907 0.85722 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.60 12.27 21.82 0.27 -44.33 16 2 C 0.01 0.46 4.81 85.23 0.41 0.87 16 3 Si 1.11 43.76 30.03 68.60 2.06 45.82 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.56 -31.18 8.93 23.40 0.21 -30.97 16 8 H 0.07 3.86 8.00 -2.91 -0.02 3.83 16 9 C 0.05 2.72 5.32 -21.28 -0.11 2.61 16 10 C -0.21 -11.17 8.07 22.48 0.18 -10.99 16 11 C -0.11 -5.64 9.92 22.11 0.22 -5.42 16 12 C -0.01 -0.51 6.67 22.79 0.15 -0.36 16 13 O -0.33 -13.53 9.84 -89.97 -0.88 -14.41 16 14 C 0.09 2.99 2.76 30.53 0.08 3.08 16 15 H 0.07 2.29 6.24 -2.39 -0.01 2.27 16 16 C -0.22 -6.24 9.92 26.26 0.26 -5.98 16 17 C -0.14 -2.90 10.77 26.26 0.28 -2.61 16 18 C -0.09 -1.64 6.81 30.53 0.21 -1.43 16 19 C -0.12 -2.76 6.92 31.70 0.22 -2.54 16 20 C -0.15 -6.83 8.76 22.11 0.19 -6.63 16 21 C -0.21 -10.88 9.74 22.49 0.22 -10.66 16 22 H 0.28 16.18 7.11 -92.71 -0.66 15.52 16 23 H 0.10 5.41 6.53 -2.91 -0.02 5.39 16 24 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 25 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 26 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.93 8.11 -2.39 -0.02 1.91 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.13 4.93 5.78 -2.91 -0.02 4.92 16 32 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -62.41 271.29 5.18 -57.22 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 1.22 Total: 26.75 kcal Atomic # 6 Polarization: -73.58 SS G_CDS: 2.53 Total: -71.05 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.27 Total: -44.33 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.88 Total: -14.41 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.06 Total: 45.82 kcal Total: -62.41 5.18 -57.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.670 kcal (2) G-P(sol) polarization free energy of solvation -62.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds