Wall clock time and date at job start Sun Mar 29 2020 21:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40069 * 126.03594 * 2 1 4 4 C 1.30834 * 108.34313 * 180.27084 * 3 2 1 5 5 C 1.39823 * 108.27744 * 359.74703 * 4 3 2 6 6 C 1.35132 * 126.03597 * 179.81791 * 2 1 3 7 7 O 1.35760 * 126.19277 * 0.02562 * 6 2 1 8 8 C 1.42901 * 116.99723 * 177.60782 * 7 6 2 9 9 H 1.08992 * 109.47584 * 20.97398 * 8 7 6 10 10 C 1.50697 * 109.47267 * 140.97703 * 8 7 6 11 11 H 1.08001 * 120.00163 * 5.33887 * 10 8 7 12 12 C 1.37875 * 120.00421 * 185.33333 * 10 8 7 13 13 N 1.31516 * 120.00151 * 185.37697 * 12 10 8 14 14 Si 1.86802 * 119.99792 * 5.37563 * 12 10 8 15 15 H 1.48494 * 109.47343 * 270.00018 * 14 12 10 16 16 H 1.48507 * 109.46930 * 29.99806 * 14 12 10 17 17 H 1.48499 * 109.47262 * 149.99541 * 14 12 10 18 18 C 1.53008 * 109.46537 * 260.97534 * 8 7 6 19 19 Cl 1.80294 * 109.47119 * 65.52646 * 18 8 7 20 20 H 1.09003 * 109.46797 * 275.15755 * 1 2 3 21 21 H 1.09003 * 109.46759 * 35.15210 * 1 2 3 22 22 H 1.08993 * 109.47022 * 155.15846 * 1 2 3 23 23 H 1.07995 * 125.86421 * 179.74193 * 4 3 2 24 24 H 1.07999 * 126.08225 * 180.02562 * 5 4 3 25 25 H 0.96993 * 120.00163 * 354.99406 * 13 12 10 26 26 H 1.09009 * 109.46496 * 185.52209 * 18 8 7 27 27 H 1.08996 * 109.47125 * 305.52088 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5355 0.7350 -0.0059 5 6 3.5498 -0.6631 -0.0040 6 6 2.2601 -1.0927 0.0035 7 8 1.8457 -2.3856 0.0071 8 6 2.8592 -3.3917 -0.0428 9 1 3.8068 -2.9700 0.2922 10 6 2.4738 -4.5380 0.8565 11 1 1.5097 -4.5419 1.3432 12 6 3.3518 -5.5817 1.0578 13 7 2.9768 -6.6313 1.7559 14 14 5.0742 -5.5051 0.3387 15 1 5.0693 -6.0987 -1.0224 16 1 5.5151 -4.0892 0.2597 17 1 6.0076 -6.2664 1.2074 18 6 3.0054 -3.8974 -1.4794 19 17 3.6229 -2.5651 -2.5256 20 1 -0.3633 0.0924 1.0236 21 1 -0.3633 0.8403 -0.5917 22 1 -0.3633 -0.9325 -0.4317 23 1 4.4043 1.3766 -0.0113 24 1 4.4291 -1.2902 -0.0072 25 1 2.1095 -6.6402 2.1901 26 1 3.7070 -4.7315 -1.5013 27 1 2.0349 -4.2291 -1.8484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226397911.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:10 Heat of formation + Delta-G solvation = 31.552210 kcal Electronic energy + Delta-G solvation = -14280.042287 eV Core-core repulsion = 11680.313778 eV Total energy + Delta-G solvation = -2599.728509 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.78247 -37.80184 -35.22135 -33.51527 -32.77273 -30.43555 -28.50563 -26.36289 -24.95940 -22.18598 -20.64778 -19.50930 -18.12949 -17.43073 -15.66803 -15.33000 -14.43308 -14.17737 -13.81933 -13.57607 -13.29758 -12.95538 -12.57258 -12.43234 -12.27341 -11.79173 -11.18995 -11.02524 -10.65003 -10.30956 -10.11796 -9.87628 -9.66333 -9.08879 -8.84311 -8.60073 -7.61044 -6.88135 -4.58017 2.46590 2.58582 2.91291 3.10354 3.20999 3.30835 3.37410 4.09811 4.13646 4.85391 4.96067 5.44318 5.44507 5.65868 5.68147 5.72312 5.83584 5.98792 6.18699 6.35344 6.65007 7.05863 7.14121 7.27091 7.89492 8.02437 8.26477 8.56901 9.13518 10.53127 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.010240 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.920847 B = 2733.618267 C = 3057.903969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.381 5.381 3 N -0.314 5.314 4 C 0.071 3.929 5 C -0.349 4.349 6 C 0.311 3.689 7 O -0.299 6.299 8 C 0.200 3.800 9 H 0.054 0.946 10 C -0.604 4.604 11 H 0.075 0.925 12 C 0.040 3.960 13 N -0.885 5.885 14 Si 1.032 2.968 15 H -0.274 1.274 16 H -0.268 1.268 17 H -0.274 1.274 18 C -0.051 4.051 19 Cl -0.219 7.219 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.178 0.822 24 H 0.147 0.853 25 H 0.276 0.724 26 H 0.096 0.904 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 8.395 -4.850 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.173 5.173 3 N -0.139 5.139 4 C -0.115 4.115 5 C -0.379 4.379 6 C 0.139 3.861 7 O -0.206 6.206 8 C 0.143 3.857 9 H 0.072 0.928 10 C -0.642 4.642 11 H 0.094 0.906 12 C -0.168 4.168 13 N -0.517 5.517 14 Si 0.858 3.142 15 H -0.201 1.201 16 H -0.193 1.193 17 H -0.200 1.200 18 C -0.114 4.114 19 Cl -0.193 7.193 20 H 0.086 0.914 21 H 0.100 0.900 22 H 0.105 0.895 23 H 0.195 0.805 24 H 0.164 0.836 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.312 8.402 -5.071 9.818 hybrid contribution -0.811 -0.015 0.082 0.815 sum -0.498 8.387 -4.989 9.771 Atomic orbital electron populations 1.21708 0.74786 1.03908 1.02851 1.48164 1.06172 1.01792 1.61184 1.77361 1.01620 1.05338 1.29549 1.23415 0.95029 0.94693 0.98313 1.20961 0.95718 0.95448 1.25730 1.19128 0.89434 0.82642 0.94877 1.85878 1.38174 1.09305 1.87263 1.21020 0.88340 0.85396 0.90939 0.92805 1.22017 1.06092 1.05575 1.30508 0.90643 1.25774 1.03814 0.91292 0.95933 1.70800 1.23805 1.27303 1.29774 0.84183 0.75654 0.77451 0.76894 1.20050 1.19289 1.19986 1.26120 1.01888 0.90527 0.92873 1.98677 1.90246 1.57062 1.73319 0.91383 0.89990 0.89484 0.80453 0.83554 0.91376 0.88646 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.54 11.44 59.85 0.68 2.22 15 2 N -0.38 -7.08 4.02 -68.28 -0.27 -7.35 15 3 N -0.31 -5.75 12.57 30.61 0.38 -5.36 15 4 C 0.07 1.20 12.02 -17.38 -0.21 0.99 15 5 C -0.35 -6.72 8.44 -39.81 -0.34 -7.06 15 6 C 0.31 6.38 7.06 -16.92 -0.12 6.26 15 7 O -0.30 -6.70 9.61 -18.99 -0.18 -6.88 15 8 C 0.20 4.56 1.79 -27.88 -0.05 4.51 15 9 H 0.05 1.25 4.37 -51.93 -0.23 1.02 15 10 C -0.60 -15.88 9.24 -34.44 -0.32 -16.20 15 11 H 0.08 2.16 8.04 -52.49 -0.42 1.74 15 12 C 0.04 1.05 5.43 -17.82 -0.10 0.96 15 13 N -0.88 -25.04 13.70 55.43 0.76 -24.28 15 14 Si 1.03 22.69 25.33 -169.99 -4.31 18.39 15 15 H -0.27 -5.62 6.77 56.52 0.38 -5.24 15 16 H -0.27 -5.47 6.36 56.52 0.36 -5.12 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 18 C -0.05 -1.05 5.93 37.16 0.22 -0.83 15 19 Cl -0.22 -4.15 27.04 -51.86 -1.40 -5.55 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 22 H 0.09 1.19 8.04 -51.93 -0.42 0.77 15 23 H 0.18 2.29 8.06 -52.49 -0.42 1.87 15 24 H 0.15 2.81 6.69 -52.49 -0.35 2.46 15 25 H 0.28 7.76 8.72 -40.82 -0.36 7.40 15 26 H 0.10 1.95 4.38 -51.92 -0.23 1.72 15 27 H 0.10 1.90 8.14 -51.93 -0.42 1.48 15 LS Contribution 246.55 15.07 3.72 3.72 Total: -1.00 -28.92 246.55 -4.08 -32.99 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.55 Total: 3.47 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.22 Total: -9.14 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.87 Total: -36.99 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.18 Total: -6.88 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.31 Total: 18.39 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -1.40 Total: -5.55 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.92 -4.08 -32.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226397911.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.547 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds