Wall clock time and date at job start Sun Mar 29 2020 21:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40069 * 126.03594 * 2 1 4 4 C 1.30834 * 108.34313 * 180.27084 * 3 2 1 5 5 C 1.39823 * 108.27744 * 359.74703 * 4 3 2 6 6 C 1.35132 * 126.03597 * 179.81791 * 2 1 3 7 7 O 1.35760 * 126.19277 * 0.02562 * 6 2 1 8 8 C 1.42901 * 116.99723 * 177.60782 * 7 6 2 9 9 H 1.08992 * 109.47584 * 20.97398 * 8 7 6 10 10 C 1.50697 * 109.47267 * 140.97703 * 8 7 6 11 11 H 1.08001 * 120.00163 * 5.33887 * 10 8 7 12 12 C 1.37875 * 120.00421 * 185.33333 * 10 8 7 13 13 N 1.31516 * 120.00151 * 185.37697 * 12 10 8 14 14 Si 1.86802 * 119.99792 * 5.37563 * 12 10 8 15 15 H 1.48494 * 109.47343 * 270.00018 * 14 12 10 16 16 H 1.48507 * 109.46930 * 29.99806 * 14 12 10 17 17 H 1.48499 * 109.47262 * 149.99541 * 14 12 10 18 18 C 1.53008 * 109.46537 * 260.97534 * 8 7 6 19 19 Cl 1.80294 * 109.47119 * 65.52646 * 18 8 7 20 20 H 1.09003 * 109.46797 * 275.15755 * 1 2 3 21 21 H 1.09003 * 109.46759 * 35.15210 * 1 2 3 22 22 H 1.08993 * 109.47022 * 155.15846 * 1 2 3 23 23 H 1.07995 * 125.86421 * 179.74193 * 4 3 2 24 24 H 1.07999 * 126.08225 * 180.02562 * 5 4 3 25 25 H 0.96993 * 120.00163 * 354.99406 * 13 12 10 26 26 H 1.09009 * 109.46496 * 185.52209 * 18 8 7 27 27 H 1.08996 * 109.47125 * 305.52088 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5355 0.7350 -0.0059 5 6 3.5498 -0.6631 -0.0040 6 6 2.2601 -1.0927 0.0035 7 8 1.8457 -2.3856 0.0071 8 6 2.8592 -3.3917 -0.0428 9 1 3.8068 -2.9700 0.2922 10 6 2.4738 -4.5380 0.8565 11 1 1.5097 -4.5419 1.3432 12 6 3.3518 -5.5817 1.0578 13 7 2.9768 -6.6313 1.7559 14 14 5.0742 -5.5051 0.3387 15 1 5.0693 -6.0987 -1.0224 16 1 5.5151 -4.0892 0.2597 17 1 6.0076 -6.2664 1.2074 18 6 3.0054 -3.8974 -1.4794 19 17 3.6229 -2.5651 -2.5256 20 1 -0.3633 0.0924 1.0236 21 1 -0.3633 0.8403 -0.5917 22 1 -0.3633 -0.9325 -0.4317 23 1 4.4043 1.3766 -0.0113 24 1 4.4291 -1.2902 -0.0072 25 1 2.1095 -6.6402 2.1901 26 1 3.7070 -4.7315 -1.5013 27 1 2.0349 -4.2291 -1.8484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226397911.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:10 Heat of formation + Delta-G solvation = 11.572549 kcal Electronic energy + Delta-G solvation = -14280.908670 eV Core-core repulsion = 11680.313778 eV Total energy + Delta-G solvation = -2600.594892 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.23045 -39.46205 -36.81201 -35.44677 -34.12529 -32.23301 -29.99633 -27.61613 -26.85297 -23.89567 -22.07431 -21.12557 -19.95661 -19.07993 -17.22560 -16.90225 -15.92980 -15.67620 -15.43605 -15.26767 -14.79312 -14.51043 -14.41635 -13.77406 -13.59059 -13.24673 -12.82991 -12.71138 -12.32475 -11.84926 -11.74374 -11.48994 -11.24707 -10.98403 -10.82703 -9.98480 -9.17529 -8.95557 -6.71031 1.02188 1.16772 1.27783 1.38909 1.46992 1.60821 1.95207 2.30508 2.62641 2.85909 3.70515 3.92159 4.06979 4.10327 4.32039 4.37846 4.56688 4.61489 4.73233 4.81932 5.08598 5.32921 5.54767 5.79165 5.83307 6.24558 6.49944 6.86998 7.11006 8.41196 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.010240 C = 0.009154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.920847 B = 2733.618267 C = 3057.903969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.386 5.386 3 N -0.321 5.321 4 C 0.077 3.923 5 C -0.356 4.356 6 C 0.282 3.718 7 O -0.316 6.316 8 C 0.206 3.794 9 H 0.056 0.944 10 C -0.612 4.612 11 H 0.034 0.966 12 C 0.000 4.000 13 N -0.916 5.916 14 Si 1.060 2.940 15 H -0.245 1.245 16 H -0.242 1.242 17 H -0.275 1.275 18 C -0.048 4.048 19 Cl -0.197 7.197 20 H 0.079 0.921 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.219 0.781 24 H 0.146 0.854 25 H 0.261 0.739 26 H 0.101 0.899 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 9.979 -6.204 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.178 5.178 3 N -0.146 5.146 4 C -0.107 4.107 5 C -0.386 4.386 6 C 0.111 3.889 7 O -0.223 6.223 8 C 0.149 3.851 9 H 0.074 0.926 10 C -0.650 4.650 11 H 0.053 0.947 12 C -0.201 4.201 13 N -0.549 5.549 14 Si 0.878 3.122 15 H -0.170 1.170 16 H -0.166 1.166 17 H -0.201 1.201 18 C -0.110 4.110 19 Cl -0.171 7.171 20 H 0.098 0.902 21 H 0.125 0.875 22 H 0.104 0.896 23 H 0.236 0.764 24 H 0.164 0.836 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.595 10.017 -6.436 12.013 hybrid contribution -1.310 -0.378 0.531 1.463 sum 0.285 9.639 -5.905 11.308 Atomic orbital electron populations 1.22000 0.72850 1.04999 1.04185 1.48536 1.07486 1.01169 1.60595 1.77346 1.02255 1.05407 1.29563 1.24026 0.95804 0.94203 0.96716 1.21151 0.95205 0.96646 1.25571 1.19362 0.90667 0.82175 0.96740 1.85805 1.38199 1.10362 1.87965 1.20744 0.88212 0.84501 0.91631 0.92610 1.22086 1.04446 1.07261 1.31202 0.94731 1.27129 1.07145 0.90503 0.95367 1.70917 1.23359 1.28895 1.31711 0.83904 0.71273 0.79232 0.77752 1.17005 1.16569 1.20067 1.25734 1.02518 0.90886 0.91901 1.98677 1.89942 1.56125 1.72309 0.90209 0.87511 0.89566 0.76421 0.83608 0.92933 0.88087 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.67 11.44 127.77 1.46 4.13 15 2 N -0.39 -13.68 4.02 -481.24 -1.93 -15.61 15 3 N -0.32 -10.92 12.57 -57.06 -0.72 -11.63 15 4 C 0.08 2.40 12.02 85.23 1.02 3.42 15 5 C -0.36 -12.93 8.44 22.12 0.19 -12.74 15 6 C 0.28 11.23 7.06 83.65 0.59 11.82 15 7 O -0.32 -14.05 9.61 -90.87 -0.87 -14.93 15 8 C 0.21 9.27 1.79 29.85 0.05 9.33 15 9 H 0.06 2.50 4.37 -2.39 -0.01 2.48 15 10 C -0.61 -32.86 9.24 25.60 0.24 -32.62 15 11 H 0.03 2.08 8.04 -2.91 -0.02 2.06 15 12 C 0.00 0.00 5.43 84.65 0.46 0.46 15 13 N -0.92 -53.10 13.70 21.45 0.29 -52.81 15 14 Si 1.06 43.98 25.33 68.60 1.74 45.71 15 15 H -0.25 -9.07 6.77 99.48 0.67 -8.40 15 16 H -0.24 -8.98 6.36 99.48 0.63 -8.35 15 17 H -0.28 -11.46 7.11 99.48 0.71 -10.75 15 18 C -0.05 -1.87 5.93 71.98 0.43 -1.44 15 19 Cl -0.20 -6.92 27.04 -2.72 -0.07 -7.00 15 20 H 0.08 1.92 8.14 -2.39 -0.02 1.91 15 21 H 0.11 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.09 2.29 8.04 -2.39 -0.02 2.27 15 23 H 0.22 4.66 8.06 -2.91 -0.02 4.64 15 24 H 0.15 5.24 6.69 -2.91 -0.02 5.22 15 25 H 0.26 15.41 8.72 -92.71 -0.81 14.60 15 26 H 0.10 3.87 4.38 -2.38 -0.01 3.86 15 27 H 0.10 3.80 8.14 -2.39 -0.02 3.78 15 Total: -1.00 -62.24 246.55 3.91 -58.32 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.04 Total: 15.59 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.44 Total: -17.65 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.36 Total: -80.05 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.87 Total: -14.93 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.74 Total: 45.71 kcal Atomic # 17 Polarization: -6.92 SS G_CDS: -0.07 Total: -7.00 kcal Total: -62.24 3.91 -58.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226397911.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.894 kcal (2) G-P(sol) polarization free energy of solvation -62.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds