Wall clock time and date at job start Sun Mar 29 2020 21:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35281 * 126.08777 * 2 1 4 4 C 1.40283 * 107.87604 * 180.02562 * 3 2 1 5 5 O 1.35984 * 125.95614 * 179.97438 * 4 3 2 6 6 C 1.42903 * 117.00197 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46896 * 30.00388 * 6 5 4 8 8 C 1.50704 * 109.47175 * 150.00106 * 6 5 4 9 9 H 1.07999 * 119.99623 * 95.14281 * 8 6 5 10 10 C 1.37875 * 119.99851 * 275.14394 * 8 6 5 11 11 N 1.31507 * 120.00237 * 356.01161 * 10 8 6 12 12 Si 1.86799 * 119.99695 * 175.73724 * 10 8 6 13 13 H 1.48502 * 109.47309 * 60.00159 * 12 10 8 14 14 H 1.48497 * 109.47254 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47195 * 300.00144 * 12 10 8 16 16 C 1.53001 * 109.47258 * 270.00447 * 6 5 4 17 17 Cl 1.80294 * 109.47175 * 65.70928 * 16 6 5 18 18 N 1.31112 * 108.08586 * 0.24714 * 4 3 2 19 19 N 1.34947 * 126.08468 * 180.02562 * 2 1 3 20 20 H 0.97002 * 125.99347 * 359.97433 * 19 2 1 21 21 H 1.09006 * 109.47110 * 89.99924 * 1 2 3 22 22 H 1.09000 * 109.47096 * 209.99731 * 1 2 3 23 23 H 1.08997 * 109.47092 * 329.99855 * 1 2 3 24 24 H 1.08006 * 126.05755 * 0.02562 * 3 2 1 25 25 H 0.97007 * 120.00323 * 5.30475 * 11 10 8 26 26 H 1.08998 * 109.46953 * 185.71652 * 16 6 5 27 27 H 1.09007 * 109.46712 * 305.71006 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3039 1.0932 0.0000 4 6 3.6364 0.6548 -0.0006 5 8 4.7389 1.4509 -0.0013 6 6 6.0103 0.7984 -0.0024 7 1 5.9268 -0.1591 -0.5164 8 6 7.0185 1.6640 -0.7134 9 1 7.6523 2.3307 -0.1475 10 6 7.1317 1.6047 -2.0862 11 7 6.4161 0.7373 -2.7682 12 14 8.2959 2.7616 -2.9781 13 1 9.6821 2.5393 -2.4939 14 1 8.2339 2.4976 -4.4381 15 1 7.8979 4.1671 -2.7113 16 6 6.4651 0.5652 1.4397 17 17 5.3500 -0.6040 2.2399 18 7 3.6335 -0.6563 -0.0063 19 7 2.3018 -1.0906 -0.0005 20 1 2.0033 -2.0135 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.9727 2.1213 0.0004 25 1 5.7531 0.1928 -2.3154 26 1 7.4773 0.1608 1.4405 27 1 6.4511 1.5104 1.9825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226668004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:51 Heat of formation + Delta-G solvation = -9.413852 kcal Electronic energy + Delta-G solvation = -14146.687610 eV Core-core repulsion = 11545.182679 eV Total energy + Delta-G solvation = -2601.504930 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06143 -39.23510 -36.68787 -35.30153 -32.97438 -32.06113 -30.87492 -27.79888 -26.76703 -23.98910 -21.76500 -21.39376 -19.33935 -18.19844 -17.56031 -16.68443 -16.04159 -15.69445 -15.27090 -14.73903 -14.61180 -14.29403 -13.91992 -13.59009 -13.44999 -13.02333 -12.84607 -12.68687 -12.16816 -11.92345 -11.47073 -11.40206 -11.11423 -10.93947 -10.61804 -9.53893 -9.29527 -8.86007 -6.70344 1.06590 1.38346 1.53510 1.61025 1.81757 1.97349 2.03908 2.47548 2.70762 3.28766 3.95679 4.02791 4.08567 4.15975 4.41436 4.53486 4.80150 4.86237 4.87330 5.11314 5.26801 5.41076 5.60924 5.94188 6.27816 6.54737 6.80608 7.02878 7.21426 8.50585 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.009450 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.491404 B = 2962.353645 C = 3652.614237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.121 3.879 3 C -0.322 4.322 4 C 0.247 3.753 5 O -0.321 6.321 6 C 0.186 3.814 7 H 0.028 0.972 8 C -0.616 4.616 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.908 5.908 12 Si 1.125 2.875 13 H -0.258 1.258 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.024 4.024 17 Cl -0.199 7.199 18 N -0.361 5.361 19 N -0.467 5.467 20 H 0.448 0.552 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.151 0.849 25 H 0.259 0.741 26 H 0.106 0.894 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -1.330 5.683 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 C -0.352 4.352 4 C 0.043 3.957 5 O -0.226 6.226 6 C 0.132 3.868 7 H 0.046 0.954 8 C -0.653 4.653 9 H 0.089 0.911 10 C -0.215 4.215 11 N -0.542 5.542 12 Si 0.944 3.056 13 H -0.183 1.183 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.087 4.087 17 Cl -0.173 7.173 18 N -0.202 5.202 19 N -0.181 5.181 20 H 0.294 0.706 21 H 0.114 0.886 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.169 0.831 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.754 -1.735 4.297 9.033 hybrid contribution -1.083 -0.435 1.587 1.970 sum -8.837 -2.170 5.884 10.836 Atomic orbital electron populations 1.20621 0.83037 1.05638 1.04837 1.21575 0.96405 0.85711 0.97276 1.20882 0.89047 1.00897 1.24364 1.21225 0.89648 0.89306 0.95506 1.86686 1.13513 1.34531 1.87890 1.20403 0.79767 0.94929 0.91731 0.95421 1.22258 1.19186 1.28712 0.95111 0.91124 1.27734 1.00108 0.97535 0.96166 1.70877 1.22147 1.20774 1.40437 0.82876 0.74165 0.73768 0.74833 1.18290 1.20769 1.19229 1.24982 0.94794 0.93819 0.95129 1.98663 1.69482 1.65938 1.83179 1.77566 0.97984 1.11190 1.33416 1.45798 1.02618 1.08678 1.61056 0.70579 0.88602 0.88595 0.88273 0.83135 0.93053 0.87609 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.43 71.24 0.74 -0.62 15 2 C 0.12 3.62 7.20 41.40 0.30 3.92 15 3 C -0.32 -12.65 10.73 22.08 0.24 -12.41 15 4 C 0.25 11.95 6.95 85.30 0.59 12.54 15 5 O -0.32 -17.47 9.84 -93.37 -0.92 -18.39 15 6 C 0.19 9.96 1.99 29.85 0.06 10.02 15 7 H 0.03 1.65 5.85 -2.39 -0.01 1.64 15 8 C -0.62 -34.58 8.69 25.60 0.22 -34.36 15 9 H 0.07 3.75 7.81 -2.91 -0.02 3.73 15 10 C -0.01 -0.74 5.46 84.66 0.46 -0.28 15 11 N -0.91 -56.19 13.62 21.45 0.29 -55.90 15 12 Si 1.12 48.53 29.91 68.60 2.05 50.58 15 13 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 16 C -0.02 -1.08 6.31 71.98 0.45 -0.63 15 17 Cl -0.20 -8.32 26.18 -2.72 -0.07 -8.39 15 18 N -0.36 -16.32 9.69 -170.50 -1.65 -17.98 15 19 N -0.47 -15.54 7.35 -48.02 -0.35 -15.89 15 20 H 0.45 11.10 8.96 -213.33 -1.91 9.18 15 21 H 0.10 1.34 8.14 -2.38 -0.02 1.32 15 22 H 0.10 1.09 8.14 -2.39 -0.02 1.07 15 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.15 5.39 8.06 -2.91 -0.02 5.36 15 25 H 0.26 16.76 6.68 -92.70 -0.62 16.14 15 26 H 0.11 4.37 8.14 -2.39 -0.02 4.35 15 27 H 0.09 3.89 8.14 -2.38 -0.02 3.87 15 Total: -1.00 -72.56 253.73 1.85 -70.71 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.57 Total: 17.07 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.07 Total: -21.81 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.71 Total: -89.77 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.92 Total: -18.39 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Atomic # 17 Polarization: -8.32 SS G_CDS: -0.07 Total: -8.39 kcal Total: -72.56 1.85 -70.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226668004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.293 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds