Wall clock time and date at job start Sun Mar 29 2020 21:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34953 * 125.98853 * 2 1 4 4 C 1.35272 * 107.82951 * 180.02562 * 3 2 1 5 5 C 1.40292 * 107.87609 * 359.97438 * 4 3 2 6 6 O 1.35992 * 125.95916 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00232 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47370 * 29.99922 * 7 6 5 9 9 C 1.50700 * 109.47465 * 150.00311 * 7 6 5 10 10 H 1.07992 * 120.00172 * 34.98691 * 9 7 6 11 11 C 1.37874 * 119.99969 * 214.99478 * 9 7 6 12 12 N 1.31512 * 120.00227 * 184.83345 * 11 9 7 13 13 Si 1.86804 * 120.00222 * 4.82964 * 11 9 7 14 14 H 1.48503 * 109.46997 * 84.80829 * 13 11 9 15 15 H 1.48494 * 109.47355 * 204.81216 * 13 11 9 16 16 H 1.48500 * 109.47095 * 324.81182 * 13 11 9 17 17 C 1.53008 * 109.47156 * 270.00455 * 7 6 5 18 18 Cl 1.80292 * 109.47400 * 65.70284 * 17 7 6 19 19 N 1.31114 * 108.08620 * 0.24432 * 5 4 3 20 20 H 1.08996 * 109.47734 * 89.99571 * 1 2 3 21 21 H 1.09002 * 109.47273 * 210.00130 * 1 2 3 22 22 H 1.08999 * 109.47214 * 329.99221 * 1 2 3 23 23 H 1.07997 * 126.08363 * 359.97438 * 3 2 1 24 24 H 1.08002 * 126.06621 * 179.97438 * 4 3 2 25 25 H 0.96995 * 120.00421 * 179.97438 * 12 11 9 26 26 H 1.09006 * 109.46588 * 305.70199 * 17 7 6 27 27 H 1.08996 * 109.47227 * 185.70862 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0919 0.0000 4 6 3.5433 0.6704 -0.0006 5 6 3.5364 -0.7325 -0.0003 6 8 4.6332 -1.5365 -0.0013 7 6 4.4038 -2.9469 -0.0014 8 1 3.4666 -3.1626 -0.5146 9 6 5.5371 -3.6403 -0.7126 10 1 6.5424 -3.2543 -0.6311 11 6 5.2905 -4.7672 -1.4676 12 7 6.2904 -5.4271 -2.0102 13 14 3.5361 -5.3571 -1.7199 14 1 2.9280 -4.6277 -2.8617 15 1 3.5402 -6.8136 -2.0087 16 1 2.7453 -5.0986 -0.4899 17 6 4.3228 -3.4506 1.4411 18 17 2.8678 -2.7489 2.2420 19 7 2.2881 -1.1334 -0.0050 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.9256 2.1195 -0.0004 24 1 4.4196 1.3017 -0.0011 25 1 6.1170 -6.2201 -2.5410 26 1 5.2182 -3.1461 1.9831 27 1 4.2494 -4.5381 1.4427 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227680355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:12 Heat of formation + Delta-G solvation = 11.333631 kcal Electronic energy + Delta-G solvation = -14184.466638 eV Core-core repulsion = 11583.861386 eV Total energy + Delta-G solvation = -2600.605252 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.97781 -39.29058 -36.64945 -35.24861 -33.53544 -32.02127 -30.85998 -27.30849 -27.03214 -23.58386 -22.01592 -21.05737 -19.42023 -18.34693 -17.42880 -16.75007 -16.45025 -15.59516 -15.24836 -14.82616 -14.73880 -14.49501 -14.28737 -13.57047 -13.46120 -13.11720 -13.04469 -12.93242 -12.25671 -11.95672 -11.69627 -11.35428 -11.21230 -11.07941 -10.89045 -9.69347 -9.10065 -8.53396 -6.66261 1.14055 1.22188 1.27291 1.38406 1.44474 1.70147 2.06733 2.15690 2.60293 2.94188 3.83278 4.10768 4.13086 4.24258 4.36143 4.53759 4.66966 4.76914 4.89361 4.92353 5.09835 5.26494 5.28284 5.94517 6.36419 6.45081 6.70995 6.94780 7.08174 8.61478 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.009840 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.467365 B = 2844.893800 C = 2914.465432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.377 5.377 3 C 0.095 3.905 4 C -0.311 4.311 5 C 0.237 3.763 6 O -0.308 6.308 7 C 0.192 3.808 8 H 0.046 0.954 9 C -0.537 4.537 10 H 0.049 0.951 11 C 0.044 3.956 12 N -0.915 5.915 13 Si 0.926 3.074 14 H -0.270 1.270 15 H -0.264 1.264 16 H -0.247 1.247 17 C -0.033 4.033 18 Cl -0.202 7.202 19 N -0.367 5.367 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.230 0.770 24 H 0.157 0.843 25 H 0.279 0.721 26 H 0.094 0.906 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 10.961 4.884 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.052 4.052 4 C -0.341 4.341 5 C 0.033 3.967 6 O -0.213 6.213 7 C 0.136 3.864 8 H 0.064 0.936 9 C -0.574 4.574 10 H 0.067 0.933 11 C -0.159 4.159 12 N -0.551 5.551 13 Si 0.749 3.251 14 H -0.195 1.195 15 H -0.189 1.189 16 H -0.170 1.170 17 C -0.097 4.097 18 Cl -0.176 7.176 19 N -0.207 5.207 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.144 0.856 23 H 0.246 0.754 24 H 0.174 0.826 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.879 9.856 4.834 17.696 hybrid contribution 0.311 -0.102 -0.272 0.426 sum -13.568 9.754 4.561 17.321 Atomic orbital electron populations 1.22125 0.71877 1.05654 1.04292 1.48374 1.07479 1.02760 1.57714 1.23052 0.88704 0.95065 0.98362 1.21140 0.99445 0.90741 1.22783 1.21172 0.86530 0.91980 0.97010 1.86387 1.26789 1.19594 1.88535 1.20434 0.97421 0.76410 0.92178 0.93607 1.20812 0.93993 1.11061 1.31564 0.93277 1.25644 1.01355 0.95631 0.93255 1.69941 1.33417 1.18721 1.33062 0.86041 0.80054 0.78539 0.80511 1.19489 1.18880 1.17047 1.25481 0.88011 1.00575 0.95588 1.98657 1.47999 1.87551 1.83383 1.77571 1.00793 1.09471 1.32842 0.89866 0.90570 0.85641 0.75351 0.82566 0.91133 0.88766 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 11.47 127.77 1.47 3.20 15 2 N -0.38 -10.91 4.01 -369.61 -1.48 -12.39 15 3 C 0.10 2.33 11.48 83.53 0.96 3.29 15 4 C -0.31 -10.50 10.82 22.08 0.24 -10.26 15 5 C 0.24 10.31 6.95 85.30 0.59 10.90 15 6 O -0.31 -15.58 9.84 -93.46 -0.92 -16.49 15 7 C 0.19 9.77 1.94 29.85 0.06 9.83 15 8 H 0.05 2.40 4.45 -2.38 -0.01 2.39 15 9 C -0.54 -31.28 9.23 25.60 0.24 -31.04 15 10 H 0.05 3.16 8.06 -2.91 -0.02 3.14 15 11 C 0.04 2.50 5.47 84.65 0.46 2.97 15 12 N -0.91 -54.81 13.96 21.45 0.30 -54.51 15 13 Si 0.93 43.69 26.99 68.60 1.85 45.55 15 14 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 16 H -0.25 -11.19 6.82 99.48 0.68 -10.52 15 17 C -0.03 -1.48 6.31 71.98 0.45 -1.03 15 18 Cl -0.20 -8.18 26.18 -2.72 -0.07 -8.25 15 19 N -0.37 -14.99 9.57 -170.48 -1.63 -16.62 15 20 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.13 1.08 8.14 -2.39 -0.02 1.06 15 23 H 0.23 2.67 8.06 -2.91 -0.02 2.65 15 24 H 0.16 4.70 8.06 -2.91 -0.02 4.68 15 25 H 0.28 15.37 8.31 -92.71 -0.77 14.60 15 26 H 0.09 4.04 8.14 -2.38 -0.02 4.02 15 27 H 0.10 4.26 8.14 -2.39 -0.02 4.24 15 Total: -1.00 -72.59 252.89 3.66 -68.93 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.14 Total: 5.93 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.47 Total: -12.14 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.81 Total: -83.52 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.92 Total: -16.49 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.85 Total: 45.55 kcal Atomic # 17 Polarization: -8.18 SS G_CDS: -0.07 Total: -8.25 kcal Total: -72.59 3.66 -68.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227680355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.267 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds