Wall clock time and date at job start Sun Mar 29 2020 22:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47117 * 302.19321 * 3 2 1 5 5 C 1.52998 * 109.46988 * 182.19190 * 3 2 1 6 6 C 1.52991 * 109.47134 * 175.00177 * 5 3 2 7 7 O 1.42898 * 109.47130 * 62.19519 * 3 2 1 8 8 C 1.35643 * 116.99740 * 274.83748 * 7 3 2 9 9 C 1.38447 * 120.26571 * 5.29521 * 8 7 3 10 10 C 1.38312 * 120.04864 * 179.75082 * 9 8 7 11 11 C 1.38820 * 120.59006 * 0.55247 * 10 9 8 12 12 C 1.36484 * 120.53900 * 359.70030 * 11 10 9 13 13 C 1.40719 * 119.92950 * 0.02562 * 12 11 10 14 14 C 1.41159 * 120.28880 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99850 * 154.85927 * 14 13 12 16 16 C 1.39931 * 119.99888 * 334.85769 * 14 13 12 17 17 N 1.30861 * 120.00527 * 343.91001 * 16 14 13 18 18 Si 1.86810 * 120.00035 * 163.90873 * 16 14 13 19 19 H 1.48500 * 109.46834 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46979 * 119.99870 * 18 16 14 21 21 H 1.48495 * 109.46986 * 240.00214 * 18 16 14 22 22 H 4.18745 * 15.04111 * 359.97438 * 4 2 1 23 23 H 1.08996 * 109.47150 * 54.99929 * 5 3 2 24 24 H 1.08998 * 109.47347 * 295.00426 * 5 3 2 25 25 H 1.08998 * 109.47229 * 299.99780 * 6 5 3 26 26 H 1.08996 * 109.47305 * 59.99846 * 6 5 3 27 27 H 1.09003 * 109.47245 * 180.02562 * 6 5 3 28 28 H 1.07999 * 119.97515 * 0.02562 * 9 8 7 29 29 H 1.08004 * 119.70557 * 180.27766 * 10 9 8 30 30 H 1.08007 * 119.72793 * 179.72951 * 11 10 9 31 31 H 1.07999 * 120.03297 * 179.97438 * 12 11 10 32 32 H 0.97004 * 120.00479 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.5467 0.8697 5 6 3.1554 1.4423 0.0552 6 6 4.6801 1.4401 0.1808 7 8 3.1227 -0.6276 -1.1917 8 6 3.2324 -1.9794 -1.1735 9 6 2.7886 -2.7009 -0.0784 10 6 2.8980 -4.0796 -0.0667 11 6 3.4616 -4.7526 -1.1422 12 6 3.9116 -4.0650 -2.2319 13 6 3.8061 -2.6623 -2.2697 14 6 4.2686 -1.9436 -3.3931 15 1 3.8512 -0.9746 -3.6235 16 6 5.2680 -2.4867 -4.2082 17 7 5.9919 -3.4880 -3.7770 18 14 5.5688 -1.7826 -5.9122 19 1 4.6244 -0.6634 -6.1590 20 1 6.9637 -1.2814 -6.0015 21 1 5.3575 -2.8428 -6.9302 22 1 -1.0500 0.0000 0.0008 23 1 2.7205 1.9486 0.9169 24 1 2.8667 1.9648 -0.8568 25 1 4.9688 0.9176 1.0929 26 1 5.1150 0.9338 -0.6810 27 1 5.0430 2.4672 0.2206 28 1 2.3526 -2.1870 0.7656 29 1 2.5459 -4.6372 0.7886 30 1 3.5441 -5.8293 -1.1165 31 1 4.3490 -4.5969 -3.0638 32 1 6.6844 -3.8647 -4.3422 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:15 Heat of formation + Delta-G solvation = 28.218107 kcal Electronic energy + Delta-G solvation = -15494.377899 eV Core-core repulsion = 13000.478006 eV Total energy + Delta-G solvation = -2493.899893 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00634 -36.58533 -33.68449 -33.56272 -31.91986 -29.67913 -28.55070 -26.45576 -25.06124 -22.01664 -20.65682 -20.57419 -18.08566 -17.51075 -16.65941 -15.30056 -15.05120 -14.47628 -14.21957 -13.84855 -13.24243 -12.79192 -12.58909 -12.44921 -11.78419 -11.57081 -11.34543 -11.13880 -11.04578 -10.82572 -10.70345 -10.46790 -10.29098 -10.10444 -9.81686 -9.66009 -9.31134 -9.14271 -7.44183 -7.00481 -6.66128 -4.21546 2.77352 2.98612 3.01786 3.11369 3.12118 3.18683 3.23205 3.99673 4.42247 4.58550 4.69798 5.30136 5.35339 5.58752 5.68476 5.77741 6.05489 6.11103 6.16429 6.23738 6.31284 6.38632 6.52206 6.64933 6.98289 7.14452 7.33806 7.40605 7.77207 7.80418 7.88961 8.10242 8.25575 8.43798 8.74030 8.89781 9.10092 10.25691 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.009553 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.060233 B = 2930.291836 C = 3679.536074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.191 3.809 4 H 0.085 0.915 5 C -0.108 4.108 6 C -0.152 4.152 7 O -0.287 6.287 8 C 0.007 3.993 9 C -0.173 4.173 10 C -0.215 4.215 11 C -0.126 4.126 12 C -0.146 4.146 13 C 0.100 3.900 14 C -0.444 4.444 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.799 5.799 18 Si 0.907 3.093 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.273 1.273 22 H 0.215 0.785 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 5.533 4.434 7.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.193 4.193 3 C 0.133 3.867 4 H 0.103 0.897 5 C -0.146 4.146 6 C -0.209 4.209 7 O -0.202 6.202 8 C -0.037 4.037 9 C -0.192 4.192 10 C -0.234 4.234 11 C -0.145 4.145 12 C -0.166 4.166 13 C 0.097 3.903 14 C -0.474 4.474 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.425 5.425 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.198 1.198 22 H 0.232 0.768 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.151 5.523 4.195 7.617 hybrid contribution -0.166 0.048 -0.441 0.474 sum -3.317 5.571 3.754 7.492 Atomic orbital electron populations 1.24844 0.95797 1.01144 1.00387 1.24009 0.95255 0.99814 1.00225 1.19103 0.82651 0.94753 0.90161 0.89722 1.21502 0.96986 0.93440 1.02633 1.21743 0.94768 1.01392 1.03027 1.86104 1.81035 1.18914 1.34162 1.19195 1.07769 0.80587 0.96164 1.20612 1.06004 0.94998 0.97623 1.20129 1.10330 0.93261 0.99711 1.20392 1.01152 0.97640 0.95269 1.20912 1.03862 0.93159 0.98653 1.17056 0.91340 0.91477 0.90388 1.19451 1.16793 1.04183 1.06995 0.90002 1.25888 0.94554 0.94295 0.99640 1.69838 1.15478 1.21014 1.36208 0.86269 0.78804 0.79922 0.81800 1.18383 1.20067 1.19833 0.76818 0.90825 0.90820 0.92897 0.90851 0.92781 0.88793 0.89431 0.89358 0.85693 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.22 19.25 29.55 0.57 -2.65 16 2 C -0.19 -3.49 11.99 -37.12 -0.44 -3.93 16 3 C 0.19 3.53 2.11 -29.52 -0.06 3.47 16 4 H 0.09 1.53 6.30 -51.93 -0.33 1.20 16 5 C -0.11 -1.62 5.60 -26.74 -0.15 -1.77 16 6 C -0.15 -2.21 9.81 37.15 0.36 -1.84 16 7 O -0.29 -6.70 8.60 -18.63 -0.16 -6.86 16 8 C 0.01 0.17 6.62 -38.33 -0.25 -0.08 16 9 C -0.17 -4.07 8.71 -39.48 -0.34 -4.42 16 10 C -0.21 -4.98 10.04 -39.34 -0.39 -5.37 16 11 C -0.13 -3.04 9.97 -40.00 -0.40 -3.44 16 12 C -0.15 -3.88 8.64 -39.28 -0.34 -4.22 16 13 C 0.10 2.75 5.58 -106.68 -0.60 2.15 16 14 C -0.44 -12.14 8.72 -37.84 -0.33 -12.47 16 15 H 0.08 2.24 7.65 -52.49 -0.40 1.83 16 16 C 0.07 1.86 5.17 -17.33 -0.09 1.77 16 17 N -0.80 -20.85 10.89 55.55 0.61 -20.25 16 18 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H 0.21 2.43 7.80 -54.09 -0.42 2.01 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.99 5.69 -52.49 -0.30 1.69 16 29 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.13 3.38 6.13 -52.49 -0.32 3.06 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -29.04 280.99 -6.67 -35.71 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.85 Total: 5.84 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -2.47 Total: -32.81 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.61 Total: -20.25 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.16 Total: -6.86 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.04 -6.67 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.931 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds