Wall clock time and date at job start Sun Mar 29 2020 22:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47117 * 302.19321 * 3 2 1 5 5 C 1.52998 * 109.46988 * 182.19190 * 3 2 1 6 6 C 1.52991 * 109.47134 * 175.00177 * 5 3 2 7 7 O 1.42898 * 109.47130 * 62.19519 * 3 2 1 8 8 C 1.35643 * 116.99740 * 274.83748 * 7 3 2 9 9 C 1.38447 * 120.26571 * 5.29521 * 8 7 3 10 10 C 1.38312 * 120.04864 * 179.75082 * 9 8 7 11 11 C 1.38820 * 120.59006 * 0.55247 * 10 9 8 12 12 C 1.36484 * 120.53900 * 359.70030 * 11 10 9 13 13 C 1.40719 * 119.92950 * 0.02562 * 12 11 10 14 14 C 1.41159 * 120.28880 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99850 * 154.85927 * 14 13 12 16 16 C 1.39931 * 119.99888 * 334.85769 * 14 13 12 17 17 N 1.30861 * 120.00527 * 343.91001 * 16 14 13 18 18 Si 1.86810 * 120.00035 * 163.90873 * 16 14 13 19 19 H 1.48500 * 109.46834 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46979 * 119.99870 * 18 16 14 21 21 H 1.48495 * 109.46986 * 240.00214 * 18 16 14 22 22 H 4.18745 * 15.04111 * 359.97438 * 4 2 1 23 23 H 1.08996 * 109.47150 * 54.99929 * 5 3 2 24 24 H 1.08998 * 109.47347 * 295.00426 * 5 3 2 25 25 H 1.08998 * 109.47229 * 299.99780 * 6 5 3 26 26 H 1.08996 * 109.47305 * 59.99846 * 6 5 3 27 27 H 1.09003 * 109.47245 * 180.02562 * 6 5 3 28 28 H 1.07999 * 119.97515 * 0.02562 * 9 8 7 29 29 H 1.08004 * 119.70557 * 180.27766 * 10 9 8 30 30 H 1.08007 * 119.72793 * 179.72951 * 11 10 9 31 31 H 1.07999 * 120.03297 * 179.97438 * 12 11 10 32 32 H 0.97004 * 120.00479 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.5467 0.8697 5 6 3.1554 1.4423 0.0552 6 6 4.6801 1.4401 0.1808 7 8 3.1227 -0.6276 -1.1917 8 6 3.2324 -1.9794 -1.1735 9 6 2.7886 -2.7009 -0.0784 10 6 2.8980 -4.0796 -0.0667 11 6 3.4616 -4.7526 -1.1422 12 6 3.9116 -4.0650 -2.2319 13 6 3.8061 -2.6623 -2.2697 14 6 4.2686 -1.9436 -3.3931 15 1 3.8512 -0.9746 -3.6235 16 6 5.2680 -2.4867 -4.2082 17 7 5.9919 -3.4880 -3.7770 18 14 5.5688 -1.7826 -5.9122 19 1 4.6244 -0.6634 -6.1590 20 1 6.9637 -1.2814 -6.0015 21 1 5.3575 -2.8428 -6.9302 22 1 -1.0500 0.0000 0.0008 23 1 2.7205 1.9486 0.9169 24 1 2.8667 1.9648 -0.8568 25 1 4.9688 0.9176 1.0929 26 1 5.1150 0.9338 -0.6810 27 1 5.0430 2.4672 0.2206 28 1 2.3526 -2.1870 0.7656 29 1 2.5459 -4.6372 0.7886 30 1 3.5441 -5.8293 -1.1165 31 1 4.3490 -4.5969 -3.0638 32 1 6.6844 -3.8647 -4.3422 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:15 Heat of formation + Delta-G solvation = 13.180965 kcal Electronic energy + Delta-G solvation = -15495.029959 eV Core-core repulsion = 13000.478006 eV Total energy + Delta-G solvation = -2494.551953 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73349 -38.34567 -35.50373 -35.11923 -33.17109 -31.59991 -30.41248 -27.85634 -26.99181 -23.54918 -22.51967 -22.15874 -19.52762 -19.35272 -18.40998 -17.12209 -16.44736 -16.15830 -15.99038 -15.34687 -14.75775 -14.53957 -14.29073 -14.13006 -13.37761 -13.27930 -12.97536 -12.75131 -12.62441 -12.37946 -12.17510 -11.96940 -11.87626 -11.71802 -11.52809 -11.25196 -11.05671 -10.94532 -9.39591 -8.90727 -8.56215 -6.22721 0.92199 1.08666 1.37756 1.49124 1.53042 1.63869 1.82125 2.23261 2.74236 2.93074 3.34567 3.71808 3.98831 4.06140 4.32715 4.35992 4.49951 4.55646 4.68929 4.86577 4.99381 5.04999 5.07522 5.16037 5.22468 5.40455 5.45116 5.48268 5.86283 5.89347 6.15620 6.30782 6.51913 6.61548 6.79433 6.92419 7.21334 8.37586 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.009553 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.060233 B = 2930.291836 C = 3679.536074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.250 4.250 3 C 0.183 3.817 4 H 0.085 0.915 5 C -0.102 4.102 6 C -0.149 4.149 7 O -0.310 6.310 8 C 0.001 3.999 9 C -0.178 4.178 10 C -0.208 4.208 11 C -0.134 4.134 12 C -0.167 4.167 13 C 0.061 3.939 14 C -0.480 4.480 15 H 0.066 0.934 16 C 0.034 3.966 17 N -0.828 5.828 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.261 1.261 22 H 0.256 0.744 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 6.125 5.297 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.250 4.250 3 C 0.126 3.874 4 H 0.103 0.897 5 C -0.139 4.139 6 C -0.206 4.206 7 O -0.225 6.225 8 C -0.044 4.044 9 C -0.197 4.197 10 C -0.227 4.227 11 C -0.152 4.152 12 C -0.187 4.187 13 C 0.059 3.941 14 C -0.510 4.510 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.455 5.455 18 Si 0.800 3.200 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.186 1.186 22 H 0.272 0.728 23 H 0.125 0.875 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.202 6.113 5.080 8.991 hybrid contribution 0.045 -0.116 -0.550 0.564 sum -4.158 5.997 4.530 8.589 Atomic orbital electron populations 1.25824 0.96676 0.98577 0.97564 1.24134 0.95775 1.02298 1.02801 1.19412 0.83659 0.96016 0.88288 0.89740 1.21554 0.97152 0.91501 1.03736 1.21719 0.94519 1.02773 1.01622 1.86061 1.81457 1.17993 1.37024 1.19368 1.07063 0.81818 0.96104 1.20910 1.05635 0.95382 0.97758 1.20575 1.08583 0.93406 1.00171 1.20686 1.00694 0.99059 0.94779 1.20905 1.05197 0.93159 0.99431 1.17451 0.92768 0.92347 0.91569 1.19515 1.18496 1.04215 1.08737 0.91556 1.26672 0.93640 0.94579 1.03093 1.69874 1.15932 1.22026 1.37693 0.85208 0.78855 0.79175 0.76768 1.18764 1.18892 1.18582 0.72815 0.87525 0.91443 0.92196 0.94526 0.89985 0.86432 0.85963 0.86769 0.87177 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 19.25 74.32 1.43 -3.42 16 2 C -0.25 -8.67 11.99 31.13 0.37 -8.29 16 3 C 0.18 6.71 2.11 28.79 0.06 6.77 16 4 H 0.09 3.02 6.30 -2.39 -0.02 3.00 16 5 C -0.10 -2.97 5.60 30.59 0.17 -2.80 16 6 C -0.15 -4.26 9.81 71.98 0.71 -3.56 16 7 O -0.31 -14.88 8.60 -89.57 -0.77 -15.65 16 8 C 0.00 0.04 6.62 23.08 0.15 0.20 16 9 C -0.18 -8.23 8.71 22.34 0.19 -8.03 16 10 C -0.21 -9.29 10.04 22.43 0.23 -9.07 16 11 C -0.13 -6.39 9.97 22.00 0.22 -6.17 16 12 C -0.17 -9.12 8.64 22.47 0.19 -8.92 16 13 C 0.06 3.48 5.58 -21.20 -0.12 3.36 16 14 C -0.48 -27.48 8.72 23.40 0.20 -27.27 16 15 H 0.07 3.84 7.65 -2.91 -0.02 3.82 16 16 C 0.03 1.78 5.17 85.25 0.44 2.22 16 17 N -0.83 -44.49 10.89 21.83 0.24 -44.25 16 18 Si 0.98 40.14 29.59 68.60 2.03 42.17 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H 0.26 4.64 7.80 -4.42 -0.03 4.61 16 23 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.12 4.78 5.69 -2.91 -0.02 4.77 16 29 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 30 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.11 6.21 6.13 -2.91 -0.02 6.19 16 32 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -64.90 280.99 6.85 -58.05 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.10 Total: 24.67 kcal Atomic # 6 Polarization: -69.25 SS G_CDS: 4.25 Total: -64.99 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.24 Total: -44.25 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.77 Total: -15.65 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.90 6.85 -58.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.226 kcal (2) G-P(sol) polarization free energy of solvation -64.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds