Wall clock time and date at job start Sun Mar 29 2020 22:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00264 * 2 1 4 4 C 1.50694 * 109.47052 * 119.99936 * 3 2 1 5 5 C 1.31002 * 119.99830 * 125.00036 * 4 3 2 6 6 O 1.42896 * 109.46766 * 239.99735 * 3 2 1 7 7 C 1.35648 * 117.00180 * 149.86715 * 6 3 2 8 8 C 1.38453 * 120.25999 * 5.06880 * 7 6 3 9 9 C 1.38303 * 120.04616 * 180.25989 * 8 7 6 10 10 C 1.38817 * 120.59251 * 359.73519 * 9 8 7 11 11 C 1.36485 * 120.54029 * 359.97438 * 10 9 8 12 12 C 1.40724 * 119.93136 * 0.02562 * 11 10 9 13 13 C 1.41145 * 120.29294 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00459 * 205.60885 * 13 12 11 15 15 C 1.39941 * 120.00350 * 25.60709 * 13 12 11 16 16 N 1.30869 * 119.99586 * 24.24325 * 15 13 12 17 17 Si 1.86800 * 120.00186 * 204.24468 * 15 13 12 18 18 H 1.48505 * 109.46764 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47028 * 299.99708 * 17 15 13 20 20 H 1.48498 * 109.46984 * 60.00138 * 17 15 13 21 21 H 1.08003 * 119.99387 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00449 * 180.02562 * 1 2 3 23 23 H 1.08007 * 119.99675 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47153 * 359.97438 * 3 2 1 25 25 H 1.07998 * 120.00573 * 304.99705 * 4 3 2 26 26 H 1.07994 * 120.00077 * 359.97438 * 5 4 3 27 27 H 1.08005 * 120.00113 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.97307 * 359.97250 * 8 7 6 29 29 H 1.07998 * 119.70603 * 179.76244 * 9 8 7 30 30 H 1.08003 * 119.73319 * 180.02562 * 10 9 8 31 31 H 1.08008 * 120.03734 * 180.02562 * 11 10 9 32 32 H 0.96997 * 119.99993 * 5.68611 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9299 1.3848 1.2304 5 6 4.2163 1.6026 1.1127 6 8 2.8851 1.3806 -1.1667 7 6 3.1261 2.6165 -1.6713 8 6 2.6752 3.7427 -1.0040 9 6 2.9187 5.0004 -1.5252 10 6 3.6192 5.1488 -2.7144 11 6 4.0799 4.0554 -3.3891 12 6 3.8447 2.7651 -2.8790 13 6 4.3172 1.6291 -3.5707 14 1 3.8229 0.6769 -3.4466 15 6 5.4261 1.7365 -4.4175 16 7 6.2999 2.6931 -4.2331 17 14 5.6591 0.5144 -5.8110 18 1 6.9009 0.8439 -6.5558 19 1 5.7651 -0.8578 -5.2534 20 1 4.4963 0.5862 -6.7319 21 1 -0.5399 0.9354 0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3553 2.1336 -0.0005 25 1 2.4904 1.2626 2.2093 26 1 4.6560 1.7246 0.1339 27 1 4.8374 1.6594 1.9945 28 1 2.1288 3.6386 -0.0782 29 1 2.5611 5.8749 -1.0020 30 1 3.8019 6.1376 -3.1086 31 1 4.6243 4.1803 -4.3135 32 1 6.2247 3.2767 -3.4620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:21 Heat of formation + Delta-G solvation = 20.855456 kcal Electronic energy + Delta-G solvation = -15625.550830 eV Core-core repulsion = 13131.331669 eV Total energy + Delta-G solvation = -2494.219162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.23923 -36.84662 -33.94755 -33.74773 -32.12328 -29.38910 -28.72972 -25.84767 -24.92189 -21.26711 -20.94450 -20.07238 -18.85094 -18.01533 -16.75409 -15.91770 -15.05359 -14.64242 -14.08821 -13.76801 -13.61525 -13.33891 -12.64141 -12.47217 -12.06334 -11.88024 -11.22002 -11.15629 -11.01978 -10.89630 -10.51522 -10.36154 -10.06702 -9.91981 -9.44552 -9.36358 -8.98336 -8.90927 -7.64690 -7.29077 -6.95280 -4.29018 2.28974 2.65135 2.74204 2.86619 3.20397 3.30744 3.40791 4.07542 4.36095 4.61559 5.13729 5.25142 5.30062 5.51838 5.61384 5.73958 6.01190 6.04923 6.21389 6.29180 6.37849 6.65202 6.80120 6.84796 6.99997 7.02380 7.14856 7.23056 7.52590 7.65697 7.83327 7.96349 8.13129 8.25394 8.42023 8.89477 8.99043 10.12483 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.009500 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.180611 B = 2946.705122 C = 3606.984741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.131 4.131 3 C 0.137 3.863 4 C -0.194 4.194 5 C -0.162 4.162 6 O -0.292 6.292 7 C 0.008 3.992 8 C -0.165 4.165 9 C -0.229 4.229 10 C -0.106 4.106 11 C -0.206 4.206 12 C 0.087 3.913 13 C -0.504 4.504 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.802 5.802 17 Si 1.065 2.935 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.275 1.275 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -3.003 5.908 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.149 4.149 3 C 0.080 3.920 4 C -0.212 4.212 5 C -0.198 4.198 6 O -0.207 6.207 7 C -0.036 4.036 8 C -0.184 4.184 9 C -0.248 4.248 10 C -0.125 4.125 11 C -0.225 4.225 12 C 0.084 3.916 13 C -0.532 4.532 14 H 0.097 0.903 15 C -0.184 4.184 16 N -0.426 5.426 17 Si 0.889 3.111 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.201 1.201 21 H 0.114 0.886 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.418 -3.518 4.542 7.248 hybrid contribution -1.134 0.660 1.683 2.134 sum -5.552 -2.857 6.225 8.817 Atomic orbital electron populations 1.23832 0.95579 1.01897 1.00939 1.22741 0.95370 0.97907 0.98925 1.20196 0.91594 0.95562 0.84635 1.23233 0.96544 1.03454 0.97947 1.23996 0.96070 0.97031 1.02741 1.86052 1.66043 1.27480 1.41160 1.19077 1.07095 0.82192 0.95187 1.20654 1.04649 0.93099 0.99970 1.20068 1.09777 0.95070 0.99906 1.20297 0.99243 0.97065 0.95852 1.20697 1.08870 0.91674 1.01280 1.17103 0.92512 0.93553 0.88478 1.20404 1.12932 0.97006 1.22893 0.90258 1.26997 0.91985 0.99030 1.00435 1.70469 1.31125 1.13557 1.27421 0.83639 0.77269 0.75046 0.75160 1.19951 1.20159 1.20068 0.88589 0.88018 0.86813 0.90628 0.87241 0.86731 0.88973 0.88507 0.89289 0.89242 0.87100 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 14.32 29.01 0.42 -2.01 16 2 C -0.13 -2.04 9.13 -36.03 -0.33 -2.37 16 3 C 0.14 2.50 2.53 -29.04 -0.07 2.43 16 4 C -0.19 -3.20 9.13 -36.03 -0.33 -3.52 16 5 C -0.16 -2.85 13.79 29.01 0.40 -2.45 16 6 O -0.29 -6.75 7.95 -18.64 -0.15 -6.90 16 7 C 0.01 0.21 5.58 -38.33 -0.21 0.00 16 8 C -0.16 -3.75 8.77 -39.48 -0.35 -4.10 16 9 C -0.23 -5.17 10.04 -39.34 -0.39 -5.57 16 10 C -0.11 -2.50 9.97 -40.00 -0.40 -2.90 16 11 C -0.21 -5.33 7.86 -39.28 -0.31 -5.64 16 12 C 0.09 2.34 5.32 -106.68 -0.57 1.77 16 13 C -0.50 -13.76 8.66 -37.84 -0.33 -14.09 16 14 H 0.08 2.18 7.71 -52.49 -0.40 1.78 16 15 C 0.04 0.94 4.97 -17.32 -0.09 0.85 16 16 N -0.80 -21.57 12.31 55.55 0.68 -20.89 16 17 Si 1.07 22.16 30.00 -169.99 -5.10 17.06 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H 0.10 1.20 7.83 -52.48 -0.41 0.79 16 22 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 23 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 24 H 0.08 1.36 5.60 -51.93 -0.29 1.07 16 25 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 26 H 0.11 2.45 6.19 -52.49 -0.33 2.13 16 27 H 0.09 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.10 1.97 5.80 -52.49 -0.30 1.67 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.11 2.94 6.44 -52.48 -0.34 2.61 16 32 H 0.30 8.24 6.58 -40.82 -0.27 7.97 16 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -28.21 276.14 -6.64 -34.85 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.68 Total: 9.31 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: -2.56 Total: -37.60 kcal Atomic # 7 Polarization: -21.57 SS G_CDS: 0.68 Total: -20.89 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.15 Total: -6.90 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.10 Total: 17.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.21 -6.64 -34.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.706 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds