Wall clock time and date at job start Sun Mar 29 2020 22:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00264 * 2 1 4 4 C 1.50694 * 109.47052 * 119.99936 * 3 2 1 5 5 C 1.31002 * 119.99830 * 125.00036 * 4 3 2 6 6 O 1.42896 * 109.46766 * 239.99735 * 3 2 1 7 7 C 1.35648 * 117.00180 * 149.86715 * 6 3 2 8 8 C 1.38453 * 120.25999 * 5.06880 * 7 6 3 9 9 C 1.38303 * 120.04616 * 180.25989 * 8 7 6 10 10 C 1.38817 * 120.59251 * 359.73519 * 9 8 7 11 11 C 1.36485 * 120.54029 * 359.97438 * 10 9 8 12 12 C 1.40724 * 119.93136 * 0.02562 * 11 10 9 13 13 C 1.41145 * 120.29294 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00459 * 205.60885 * 13 12 11 15 15 C 1.39941 * 120.00350 * 25.60709 * 13 12 11 16 16 N 1.30869 * 119.99586 * 24.24325 * 15 13 12 17 17 Si 1.86800 * 120.00186 * 204.24468 * 15 13 12 18 18 H 1.48505 * 109.46764 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47028 * 299.99708 * 17 15 13 20 20 H 1.48498 * 109.46984 * 60.00138 * 17 15 13 21 21 H 1.08003 * 119.99387 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00449 * 180.02562 * 1 2 3 23 23 H 1.08007 * 119.99675 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47153 * 359.97438 * 3 2 1 25 25 H 1.07998 * 120.00573 * 304.99705 * 4 3 2 26 26 H 1.07994 * 120.00077 * 359.97438 * 5 4 3 27 27 H 1.08005 * 120.00113 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.97307 * 359.97250 * 8 7 6 29 29 H 1.07998 * 119.70603 * 179.76244 * 9 8 7 30 30 H 1.08003 * 119.73319 * 180.02562 * 10 9 8 31 31 H 1.08008 * 120.03734 * 180.02562 * 11 10 9 32 32 H 0.96997 * 119.99993 * 5.68611 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9299 1.3848 1.2304 5 6 4.2163 1.6026 1.1127 6 8 2.8851 1.3806 -1.1667 7 6 3.1261 2.6165 -1.6713 8 6 2.6752 3.7427 -1.0040 9 6 2.9187 5.0004 -1.5252 10 6 3.6192 5.1488 -2.7144 11 6 4.0799 4.0554 -3.3891 12 6 3.8447 2.7651 -2.8790 13 6 4.3172 1.6291 -3.5707 14 1 3.8229 0.6769 -3.4466 15 6 5.4261 1.7365 -4.4175 16 7 6.2999 2.6931 -4.2331 17 14 5.6591 0.5144 -5.8110 18 1 6.9009 0.8439 -6.5558 19 1 5.7651 -0.8578 -5.2534 20 1 4.4963 0.5862 -6.7319 21 1 -0.5399 0.9354 0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3553 2.1336 -0.0005 25 1 2.4904 1.2626 2.2093 26 1 4.6560 1.7246 0.1339 27 1 4.8374 1.6594 1.9945 28 1 2.1288 3.6386 -0.0782 29 1 2.5611 5.8749 -1.0020 30 1 3.8019 6.1376 -3.1086 31 1 4.6243 4.1803 -4.3135 32 1 6.2247 3.2767 -3.4620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:20 Heat of formation + Delta-G solvation = 6.336515 kcal Electronic energy + Delta-G solvation = -15626.180419 eV Core-core repulsion = 13131.331669 eV Total energy + Delta-G solvation = -2494.848750 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95789 -38.60741 -35.72379 -35.32331 -33.39388 -31.30269 -30.58592 -27.30426 -26.82659 -23.07888 -22.73824 -21.36630 -20.31101 -19.88835 -18.40039 -17.42971 -16.72049 -16.51448 -15.76489 -15.31289 -15.11084 -14.85321 -14.37577 -14.13790 -13.74031 -13.66130 -12.88666 -12.82575 -12.51102 -12.36268 -12.21030 -11.95517 -11.77242 -11.63264 -11.24071 -10.86698 -10.60912 -10.28757 -9.58533 -9.28180 -8.86000 -6.32369 0.83417 0.94669 1.13099 1.33215 1.49295 1.62876 1.79087 2.34407 2.68982 2.83065 3.51606 3.85323 3.96092 4.02374 4.27426 4.32637 4.39806 4.50180 4.61412 4.90119 4.92377 4.98733 5.15796 5.27930 5.49928 5.53515 5.62607 5.68021 5.74987 5.82878 5.86244 5.99300 6.15723 6.34976 6.52529 6.92165 7.13819 8.08697 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.009500 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.180611 B = 2946.705122 C = 3606.984741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.165 4.165 3 C 0.125 3.875 4 C -0.178 4.178 5 C -0.181 4.181 6 O -0.317 6.317 7 C 0.010 3.990 8 C -0.170 4.170 9 C -0.214 4.214 10 C -0.117 4.117 11 C -0.219 4.219 12 C 0.049 3.951 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.823 5.823 17 Si 1.115 2.885 18 H -0.268 1.268 19 H -0.262 1.262 20 H -0.264 1.264 21 H 0.104 0.896 22 H 0.130 0.870 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -3.059 7.300 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.183 4.183 3 C 0.069 3.931 4 C -0.196 4.196 5 C -0.218 4.218 6 O -0.232 6.232 7 C -0.035 4.035 8 C -0.188 4.188 9 C -0.233 4.233 10 C -0.136 4.136 11 C -0.239 4.239 12 C 0.046 3.954 13 C -0.569 4.569 14 H 0.081 0.919 15 C -0.214 4.214 16 N -0.448 5.448 17 Si 0.932 3.068 18 H -0.193 1.193 19 H -0.187 1.187 20 H -0.188 1.188 21 H 0.123 0.877 22 H 0.148 0.852 23 H 0.131 0.869 24 H 0.098 0.902 25 H 0.166 0.834 26 H 0.087 0.913 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.306 -3.565 5.961 9.382 hybrid contribution -0.754 0.746 1.439 1.788 sum -7.061 -2.819 7.400 10.610 Atomic orbital electron populations 1.24150 0.94616 1.03669 0.96592 1.22643 0.96223 0.96581 1.02896 1.20607 0.91555 0.97336 0.83578 1.23473 0.95836 1.01432 0.98850 1.23910 0.97110 0.99124 1.01620 1.86024 1.67145 1.26855 1.43179 1.19213 1.05997 0.83638 0.94623 1.20981 1.04502 0.92557 1.00803 1.20570 1.07446 0.96300 0.98997 1.20611 0.99114 0.97549 0.96280 1.20699 1.09478 0.92443 1.01280 1.17483 0.93919 0.94041 0.89930 1.20448 1.14294 0.96695 1.25465 0.91872 1.28363 0.91018 0.99919 1.02074 1.70585 1.31984 1.14845 1.27341 0.83040 0.77710 0.73442 0.72602 1.19277 1.18694 1.18844 0.87735 0.85188 0.86868 0.90182 0.83367 0.91321 0.86099 0.85709 0.85609 0.86565 0.88803 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 14.32 67.78 0.97 -2.53 16 2 C -0.17 -4.83 9.13 25.65 0.23 -4.60 16 3 C 0.13 4.40 2.53 29.10 0.07 4.48 16 4 C -0.18 -5.53 9.13 25.64 0.23 -5.29 16 5 C -0.18 -6.29 13.79 67.78 0.93 -5.36 16 6 O -0.32 -14.90 7.95 -89.63 -0.71 -15.62 16 7 C 0.01 0.49 5.58 23.08 0.13 0.62 16 8 C -0.17 -7.48 8.77 22.34 0.20 -7.28 16 9 C -0.21 -9.18 10.04 22.42 0.23 -8.96 16 10 C -0.12 -5.44 9.97 22.00 0.22 -5.22 16 11 C -0.22 -11.74 7.86 22.47 0.18 -11.56 16 12 C 0.05 2.75 5.32 -21.20 -0.11 2.64 16 13 C -0.54 -31.05 8.66 23.40 0.20 -30.84 16 14 H 0.06 3.69 7.71 -2.91 -0.02 3.67 16 15 C 0.00 0.05 4.97 85.25 0.42 0.47 16 16 N -0.82 -46.40 12.31 21.83 0.27 -46.13 16 17 Si 1.11 45.81 30.00 68.60 2.06 47.86 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H 0.10 2.21 7.83 -2.91 -0.02 2.19 16 22 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 23 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 24 H 0.08 2.70 5.60 -2.39 -0.01 2.68 16 25 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 26 H 0.07 3.06 6.19 -2.91 -0.02 3.05 16 27 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.13 4.73 5.80 -2.91 -0.02 4.71 16 29 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 30 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.09 5.24 6.44 -2.91 -0.02 5.22 16 32 H 0.28 16.52 6.58 -92.71 -0.61 15.91 16 Total: -1.00 -64.11 276.14 6.78 -57.33 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 1.26 Total: 29.99 kcal Atomic # 6 Polarization: -77.34 SS G_CDS: 3.91 Total: -73.43 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.27 Total: -46.13 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.71 Total: -15.62 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.06 Total: 47.86 kcal Total: -64.11 6.78 -57.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.665 kcal (2) G-P(sol) polarization free energy of solvation -64.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds