Wall clock time and date at job start Sun Mar 29 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46998 * 215.56995 * 3 2 1 5 5 H 1.08999 * 109.47241 * 55.00048 * 4 3 2 6 6 C 1.53002 * 109.46902 * 175.00074 * 4 3 2 7 7 O 1.42903 * 109.47067 * 294.99825 * 4 3 2 8 8 C 1.35646 * 116.99893 * 154.25209 * 7 4 3 9 9 C 1.38447 * 120.26181 * 5.31360 * 8 7 4 10 10 C 1.38310 * 120.04468 * 179.75449 * 9 8 7 11 11 C 1.38821 * 120.59246 * 0.55047 * 10 9 8 12 12 C 1.36491 * 120.53702 * 359.70183 * 11 10 9 13 13 C 1.40724 * 119.93142 * 0.02562 * 12 11 10 14 14 C 1.41153 * 120.28880 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99511 * 155.12116 * 14 13 12 16 16 C 1.39927 * 120.00174 * 335.12868 * 14 13 12 17 17 N 1.30869 * 119.99990 * 343.80827 * 16 14 13 18 18 Si 1.86796 * 120.00268 * 163.81190 * 16 14 13 19 19 H 1.48505 * 109.46921 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47211 * 119.99505 * 18 16 14 21 21 H 1.48501 * 109.47193 * 240.00031 * 18 16 14 22 22 H 4.44640 * 5.63393 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46866 * 335.57130 * 3 2 1 24 24 H 1.09000 * 109.46831 * 95.56581 * 3 2 1 25 25 H 1.08995 * 109.47344 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.47379 * 300.00010 * 6 4 3 27 27 H 1.08999 * 109.47194 * 59.99945 * 6 4 3 28 28 H 1.07997 * 119.98081 * 0.02562 * 9 8 7 29 29 H 1.08001 * 119.70137 * 180.28327 * 10 9 8 30 30 H 1.07998 * 119.73064 * 179.72982 * 11 10 9 31 31 H 1.08007 * 120.03103 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00223 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1742 0.8391 5 1 2.7209 1.1228 1.8374 6 6 4.6803 1.1032 0.9424 7 8 2.7769 2.4040 0.2175 8 6 2.6515 3.4881 1.0230 9 6 2.9917 3.4052 2.3624 10 6 2.8669 4.5148 3.1786 11 6 2.3909 5.7157 2.6704 12 6 2.0436 5.8229 1.3547 13 6 2.1670 4.7096 0.5030 14 6 1.8106 4.8122 -0.8590 15 1 2.2535 4.1461 -1.5846 16 6 0.8836 5.7769 -1.2688 17 7 0.1162 6.3636 -0.3860 18 14 0.7414 6.2272 -3.0761 19 1 1.7137 5.4271 -3.8635 20 1 -0.6360 5.9401 -3.5509 21 1 1.0341 7.6725 -3.2507 22 1 -1.0501 -0.0001 -0.0003 23 1 3.0097 -0.9349 0.4250 24 1 3.0093 0.1005 -1.0228 25 1 5.0434 1.9395 1.5397 26 1 4.9692 0.1652 1.4165 27 1 5.1149 1.1546 -0.0559 28 1 3.3589 2.4746 2.7694 29 1 3.1383 4.4451 4.2217 30 1 2.2949 6.5722 3.3212 31 1 1.6745 6.7614 0.9679 32 1 -0.5267 7.0321 -0.6702 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:53 Heat of formation + Delta-G solvation = 26.915852 kcal Electronic energy + Delta-G solvation = -15510.448540 eV Core-core repulsion = 13016.492177 eV Total energy + Delta-G solvation = -2493.956363 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.95590 -36.53290 -33.90959 -33.53733 -31.36189 -29.50901 -28.50559 -27.02741 -25.07592 -22.30882 -20.72638 -19.92382 -17.88024 -17.44956 -16.65873 -15.28628 -14.62022 -14.56069 -14.15980 -13.73204 -13.32066 -12.96257 -12.66865 -12.40213 -12.18501 -11.70212 -11.57755 -11.34919 -11.03026 -10.74943 -10.74388 -10.36842 -9.97959 -9.80240 -9.69527 -9.59882 -9.30275 -9.11679 -7.41415 -6.94293 -6.62746 -4.17618 2.79556 3.05175 3.13003 3.19673 3.20376 3.24538 3.25884 4.01644 4.30206 4.70333 4.72145 5.29357 5.44721 5.50958 5.72652 5.77386 5.90965 6.00611 6.13931 6.20936 6.31487 6.39266 6.51826 6.55998 7.01722 7.17481 7.37319 7.44002 7.80459 7.84271 8.04552 8.13145 8.28783 8.49279 8.78255 8.93012 9.15618 10.28608 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.010182 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.571037 B = 2749.190411 C = 3604.704131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C -0.006 4.006 4 C 0.087 3.913 5 H 0.066 0.934 6 C -0.175 4.175 7 O -0.298 6.298 8 C 0.016 3.984 9 C -0.180 4.180 10 C -0.215 4.215 11 C -0.128 4.128 12 C -0.147 4.147 13 C 0.097 3.903 14 C -0.443 4.443 15 H 0.081 0.919 16 C 0.072 3.928 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.260 1.260 20 H -0.276 1.276 21 H -0.273 1.273 22 H 0.213 0.787 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -7.572 0.500 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.042 4.042 4 C 0.029 3.971 5 H 0.084 0.916 6 C -0.233 4.233 7 O -0.213 6.213 8 C -0.028 4.028 9 C -0.199 4.199 10 C -0.235 4.235 11 C -0.147 4.147 12 C -0.167 4.167 13 C 0.094 3.906 14 C -0.473 4.473 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.426 5.426 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.198 1.198 22 H 0.230 0.770 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.142 0.858 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.099 -7.413 0.296 8.040 hybrid contribution -0.375 0.206 -0.425 0.603 sum 2.724 -7.207 -0.128 7.706 Atomic orbital electron populations 1.24767 0.95882 1.01077 1.01048 1.22863 0.94374 1.00137 1.00396 1.18820 0.85473 0.97643 1.02263 1.22053 0.94041 0.84449 0.96570 0.91558 1.22338 0.95923 1.02118 1.02913 1.86018 1.85052 1.15109 1.35124 1.19157 1.07713 0.87088 0.88867 1.20639 1.07508 0.98171 0.93597 1.20128 1.11465 0.94258 0.97648 1.20379 1.01983 0.96302 0.96002 1.20912 1.04472 0.98656 0.92643 1.17072 0.91622 0.87825 0.94076 1.19441 1.20328 1.14106 0.93394 0.90080 1.25884 0.94038 0.94728 0.99763 1.69846 1.15752 1.21242 1.35804 0.86274 0.78831 0.78970 0.82737 1.18400 1.20116 1.19836 0.76975 0.88675 0.88890 0.91454 0.92051 0.91733 0.88609 0.89509 0.89459 0.85755 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.54 19.25 29.55 0.57 -2.97 16 2 C -0.18 -3.12 13.10 -37.12 -0.49 -3.60 16 3 C -0.01 -0.08 5.42 -29.52 -0.16 -0.24 16 4 C 0.09 1.52 2.19 -26.73 -0.06 1.46 16 5 H 0.07 1.20 6.26 -51.93 -0.32 0.88 16 6 C -0.18 -2.55 9.20 37.16 0.34 -2.21 16 7 O -0.30 -6.93 8.83 -18.64 -0.16 -7.09 16 8 C 0.02 0.41 6.64 -38.33 -0.25 0.15 16 9 C -0.18 -4.17 8.29 -39.48 -0.33 -4.50 16 10 C -0.22 -4.97 10.04 -39.34 -0.39 -5.37 16 11 C -0.13 -3.11 9.97 -40.00 -0.40 -3.50 16 12 C -0.15 -3.94 8.64 -39.27 -0.34 -4.28 16 13 C 0.10 2.68 5.59 -106.68 -0.60 2.08 16 14 C -0.44 -12.30 8.73 -37.84 -0.33 -12.63 16 15 H 0.08 2.25 7.65 -52.49 -0.40 1.85 16 16 C 0.07 1.87 5.17 -17.33 -0.09 1.78 16 17 N -0.80 -21.27 10.88 55.55 0.60 -20.66 16 18 Si 0.91 19.47 29.59 -169.99 -5.03 14.44 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H 0.21 2.82 7.80 -54.08 -0.42 2.40 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.93 5.48 -52.49 -0.29 1.65 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.12 3.40 6.12 -52.48 -0.32 3.08 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -30.07 280.14 -6.68 -36.75 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.79 Total: 6.15 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: -2.52 Total: -33.81 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.60 Total: -20.66 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.16 Total: -7.09 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.07 -6.68 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.670 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds