Wall clock time and date at job start Sun Mar 29 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46998 * 215.56995 * 3 2 1 5 5 H 1.08999 * 109.47241 * 55.00048 * 4 3 2 6 6 C 1.53002 * 109.46902 * 175.00074 * 4 3 2 7 7 O 1.42903 * 109.47067 * 294.99825 * 4 3 2 8 8 C 1.35646 * 116.99893 * 154.25209 * 7 4 3 9 9 C 1.38447 * 120.26181 * 5.31360 * 8 7 4 10 10 C 1.38310 * 120.04468 * 179.75449 * 9 8 7 11 11 C 1.38821 * 120.59246 * 0.55047 * 10 9 8 12 12 C 1.36491 * 120.53702 * 359.70183 * 11 10 9 13 13 C 1.40724 * 119.93142 * 0.02562 * 12 11 10 14 14 C 1.41153 * 120.28880 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99511 * 155.12116 * 14 13 12 16 16 C 1.39927 * 120.00174 * 335.12868 * 14 13 12 17 17 N 1.30869 * 119.99990 * 343.80827 * 16 14 13 18 18 Si 1.86796 * 120.00268 * 163.81190 * 16 14 13 19 19 H 1.48505 * 109.46921 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47211 * 119.99505 * 18 16 14 21 21 H 1.48501 * 109.47193 * 240.00031 * 18 16 14 22 22 H 4.44640 * 5.63393 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46866 * 335.57130 * 3 2 1 24 24 H 1.09000 * 109.46831 * 95.56581 * 3 2 1 25 25 H 1.08995 * 109.47344 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.47379 * 300.00010 * 6 4 3 27 27 H 1.08999 * 109.47194 * 59.99945 * 6 4 3 28 28 H 1.07997 * 119.98081 * 0.02562 * 9 8 7 29 29 H 1.08001 * 119.70137 * 180.28327 * 10 9 8 30 30 H 1.07998 * 119.73064 * 179.72982 * 11 10 9 31 31 H 1.08007 * 120.03103 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00223 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1742 0.8391 5 1 2.7209 1.1228 1.8374 6 6 4.6803 1.1032 0.9424 7 8 2.7769 2.4040 0.2175 8 6 2.6515 3.4881 1.0230 9 6 2.9917 3.4052 2.3624 10 6 2.8669 4.5148 3.1786 11 6 2.3909 5.7157 2.6704 12 6 2.0436 5.8229 1.3547 13 6 2.1670 4.7096 0.5030 14 6 1.8106 4.8122 -0.8590 15 1 2.2535 4.1461 -1.5846 16 6 0.8836 5.7769 -1.2688 17 7 0.1162 6.3636 -0.3860 18 14 0.7414 6.2272 -3.0761 19 1 1.7137 5.4271 -3.8635 20 1 -0.6360 5.9401 -3.5509 21 1 1.0341 7.6725 -3.2507 22 1 -1.0501 -0.0001 -0.0003 23 1 3.0097 -0.9349 0.4250 24 1 3.0093 0.1005 -1.0228 25 1 5.0434 1.9395 1.5397 26 1 4.9692 0.1652 1.4165 27 1 5.1149 1.1546 -0.0559 28 1 3.3589 2.4746 2.7694 29 1 3.1383 4.4451 4.2217 30 1 2.2949 6.5722 3.3212 31 1 1.6745 6.7614 0.9679 32 1 -0.5267 7.0321 -0.6702 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:53 Heat of formation + Delta-G solvation = 10.813579 kcal Electronic energy + Delta-G solvation = -15511.146787 eV Core-core repulsion = 13016.492177 eV Total energy + Delta-G solvation = -2494.654610 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67118 -38.27993 -35.49726 -35.29640 -32.73986 -31.40286 -30.35706 -28.23867 -27.04059 -23.91309 -22.60224 -21.56669 -19.46023 -19.01781 -18.43536 -17.10814 -16.24598 -16.02445 -15.96181 -15.29730 -14.84590 -14.45231 -14.39870 -14.00217 -13.56240 -13.36937 -13.12183 -12.96733 -12.72531 -12.58866 -12.32267 -12.03791 -11.58469 -11.56208 -11.24639 -11.04623 -11.01229 -10.93200 -9.36850 -8.84228 -8.54017 -6.20395 0.93890 1.12760 1.36249 1.48662 1.51733 1.87301 1.94962 2.22789 2.72203 2.80599 3.51990 3.72692 4.02468 4.15056 4.27121 4.40985 4.53101 4.63473 4.72364 4.79112 4.88906 4.97764 5.11127 5.17359 5.23830 5.34435 5.47123 5.51444 5.89265 5.92539 6.18159 6.33307 6.56009 6.74839 6.83471 6.94590 7.28863 8.38524 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.010182 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.571037 B = 2749.190411 C = 3604.704131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.209 4.209 3 C -0.004 4.004 4 C 0.076 3.924 5 H 0.061 0.939 6 C -0.167 4.167 7 O -0.323 6.323 8 C 0.011 3.989 9 C -0.183 4.183 10 C -0.207 4.207 11 C -0.139 4.139 12 C -0.169 4.169 13 C 0.055 3.945 14 C -0.480 4.480 15 H 0.066 0.934 16 C 0.032 3.968 17 N -0.832 5.832 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.261 1.261 22 H 0.236 0.764 23 H 0.140 0.860 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -8.797 0.999 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.209 4.209 3 C -0.040 4.040 4 C 0.019 3.981 5 H 0.079 0.921 6 C -0.225 4.225 7 O -0.239 6.239 8 C -0.034 4.034 9 C -0.202 4.202 10 C -0.226 4.226 11 C -0.157 4.157 12 C -0.188 4.188 13 C 0.053 3.947 14 C -0.510 4.510 15 H 0.084 0.916 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.185 1.185 22 H 0.253 0.747 23 H 0.158 0.842 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.826 -8.651 0.815 9.494 hybrid contribution -0.563 0.466 -0.446 0.856 sum 3.263 -8.185 0.369 8.819 Atomic orbital electron populations 1.25598 0.97077 1.00762 1.00676 1.23685 0.95769 1.00559 1.00858 1.19022 0.84144 0.98323 1.02494 1.22480 0.96189 0.82873 0.96540 0.92082 1.22287 0.93238 1.03648 1.03291 1.85978 1.85269 1.16337 1.36314 1.19323 1.06863 0.87296 0.89900 1.21002 1.06787 0.99659 0.92756 1.20603 1.09259 0.93435 0.99335 1.20674 1.01720 0.97941 0.95363 1.20896 1.05906 0.98081 0.93961 1.17474 0.93188 0.89358 0.94680 1.19514 1.22107 1.15740 0.93632 0.91600 1.26678 0.93065 0.94079 1.04311 1.69888 1.16303 1.21862 1.37837 0.85220 0.78930 0.79019 0.76901 1.18634 1.19125 1.18496 0.74716 0.84250 0.88499 0.93012 0.87908 0.91520 0.85464 0.85905 0.87045 0.87435 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.40 19.25 74.32 1.43 -5.97 16 2 C -0.21 -7.13 13.10 31.12 0.41 -6.72 16 3 C 0.00 -0.11 5.42 28.79 0.16 0.05 16 4 C 0.08 2.54 2.19 30.59 0.07 2.61 16 5 H 0.06 2.09 6.26 -2.39 -0.01 2.08 16 6 C -0.17 -4.42 9.20 71.98 0.66 -3.76 16 7 O -0.32 -15.14 8.83 -89.60 -0.79 -15.93 16 8 C 0.01 0.56 6.64 23.08 0.15 0.71 16 9 C -0.18 -8.22 8.29 22.34 0.19 -8.03 16 10 C -0.21 -9.13 10.04 22.43 0.23 -8.90 16 11 C -0.14 -6.65 9.97 22.00 0.22 -6.43 16 12 C -0.17 -9.27 8.64 22.47 0.19 -9.08 16 13 C 0.06 3.17 5.59 -21.20 -0.12 3.05 16 14 C -0.48 -27.79 8.73 23.40 0.20 -27.59 16 15 H 0.07 3.85 7.65 -2.91 -0.02 3.83 16 16 C 0.03 1.69 5.17 85.25 0.44 2.14 16 17 N -0.83 -45.54 10.88 21.83 0.24 -45.30 16 18 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H 0.24 6.05 7.80 -4.41 -0.03 6.02 16 23 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.05 1.53 7.02 -2.39 -0.02 1.51 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.13 4.80 5.48 -2.91 -0.02 4.78 16 29 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.11 6.15 6.12 -2.91 -0.02 6.13 16 32 H 0.29 14.09 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -67.22 280.14 6.81 -60.42 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.10 Total: 25.92 kcal Atomic # 6 Polarization: -72.16 SS G_CDS: 4.23 Total: -67.93 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.24 Total: -45.30 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.79 Total: -15.93 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -67.22 6.81 -60.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.229 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds