Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31289 * 119.79361 * 2 1 4 4 C 1.33058 * 121.70934 * 179.97438 * 3 2 1 5 5 C 1.47862 * 119.45330 * 179.97438 * 4 3 2 6 6 C 1.42555 * 128.21635 * 179.67719 * 5 4 3 7 7 N 1.29930 * 106.23106 * 179.89689 * 6 5 4 8 8 O 1.20824 * 112.09339 * 0.39556 * 7 6 5 9 9 C 1.33850 * 111.94462 * 359.74319 * 8 7 6 10 10 C 1.39987 * 121.08728 * 359.72771 * 4 3 2 11 11 C 1.36530 * 119.46097 * 0.55384 * 10 4 3 12 12 C 1.40913 * 119.79800 * 179.97438 * 2 1 3 13 13 C 1.41049 * 120.54859 * 359.97438 * 12 2 1 14 14 H 1.07994 * 119.99957 * 334.62267 * 13 12 2 15 15 C 1.39959 * 119.99687 * 154.62680 * 13 12 2 16 16 N 1.30833 * 120.00257 * 343.60142 * 15 13 12 17 17 Si 1.86806 * 119.99846 * 163.60882 * 15 13 12 18 18 H 1.48501 * 109.46733 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47407 * 119.99259 * 17 15 13 20 20 H 1.48498 * 109.46807 * 239.99857 * 17 15 13 21 21 H 1.09003 * 109.46742 * 270.01493 * 1 2 3 22 22 H 1.08995 * 109.47728 * 30.01699 * 1 2 3 23 23 H 1.08998 * 109.46990 * 150.02521 * 1 2 3 24 24 H 1.08000 * 126.88526 * 0.02562 * 6 5 4 25 25 H 1.08002 * 126.91731 * 180.02562 * 9 8 7 26 26 H 1.07995 * 120.26839 * 180.30705 * 10 4 3 27 27 H 1.08004 * 120.78298 * 179.73387 * 11 10 4 28 28 H 0.97001 * 120.00035 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1394 0.0000 4 6 3.4892 1.1838 0.0005 5 6 4.1728 2.4949 -0.0001 6 6 5.5737 2.7591 0.0066 7 7 5.6994 4.0523 0.0008 8 8 4.6291 4.6129 -0.0004 9 6 3.6099 3.7453 -0.0010 10 6 4.2517 0.0099 0.0068 11 6 3.6206 -1.2008 0.0009 12 6 2.2073 -1.2228 0.0005 13 6 1.5095 -2.4486 0.0016 14 1 0.5081 -2.4995 0.4029 15 6 2.1148 -3.5989 -0.5172 16 7 3.1709 -3.4939 -1.2824 17 14 1.4148 -5.2840 -0.1174 18 1 0.2275 -5.1310 0.7613 19 1 1.0157 -5.9654 -1.3750 20 1 2.4449 -6.0952 0.5798 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5134 24 1 6.3707 2.0304 0.0129 25 1 2.5562 3.9822 -0.0025 26 1 5.3304 0.0614 0.0121 27 1 4.1878 -2.1199 0.0013 28 1 3.5902 -4.2912 -1.6423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239170833.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = 73.941453 kcal Electronic energy + Delta-G solvation = -14958.098527 eV Core-core repulsion = 12362.641003 eV Total energy + Delta-G solvation = -2595.457524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.29680 -38.61041 -34.61838 -33.48091 -31.76066 -31.21305 -30.15336 -27.06270 -25.69504 -22.97401 -22.21025 -20.43340 -20.17032 -17.56465 -17.42813 -16.98006 -15.72538 -15.05940 -14.70977 -14.09146 -13.41776 -13.23646 -12.71458 -12.44713 -11.91749 -11.74811 -11.68366 -11.50764 -11.25711 -11.01757 -10.95040 -10.72151 -9.96159 -9.88720 -9.58761 -9.07465 -8.39237 -8.20149 -7.41093 -7.05174 -4.62999 1.80309 2.30862 2.79855 2.83791 2.91186 2.96244 3.37621 3.68934 3.80672 4.45647 4.81438 5.21074 5.45128 5.47918 5.87726 6.01938 6.22441 6.24996 6.35698 6.55689 6.58248 6.68765 6.77053 6.80005 6.99130 7.20340 7.56002 7.68444 7.78077 8.22998 8.44530 8.53221 8.75780 9.45577 9.82215 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049994 B = 0.006455 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.938097 B = 4336.962002 C = 4820.564511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.009 3.991 3 N -0.449 5.449 4 C 0.029 3.971 5 C -0.095 4.095 6 C -0.013 4.013 7 N -0.379 5.379 8 O 0.085 5.915 9 C -0.080 4.080 10 C -0.122 4.122 11 C -0.140 4.140 12 C 0.074 3.926 13 C -0.430 4.430 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.776 5.776 17 Si 0.915 3.085 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.269 1.269 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.185 0.815 25 H 0.216 0.784 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 1.998 1.467 2.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 N -0.158 5.158 4 C -0.106 4.106 5 C -0.100 4.100 6 C -0.192 4.192 7 N -0.084 5.084 8 O 0.021 5.979 9 C -0.162 4.162 10 C -0.143 4.143 11 C -0.165 4.165 12 C 0.069 3.931 13 C -0.459 4.459 14 H 0.108 0.892 15 C -0.149 4.149 16 N -0.400 5.400 17 Si 0.738 3.262 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.194 1.194 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.202 0.798 25 H 0.232 0.768 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.069 3.461 1.310 3.701 hybrid contribution -0.118 -2.476 0.029 2.479 sum -0.050 0.985 1.339 1.663 Atomic orbital electron populations 1.20260 0.90849 1.01327 1.00454 1.20963 0.95147 0.87829 1.09718 1.66690 1.08299 1.30702 1.10086 1.17672 0.88772 0.88445 1.15743 1.19940 0.91641 0.93807 1.04617 1.24986 0.97062 0.92630 1.04546 1.73570 1.05290 1.09818 1.19719 1.84591 1.10381 1.34908 1.68049 1.25982 0.95090 0.88026 1.07053 1.21173 0.98419 0.93278 1.01427 1.21290 0.94731 0.96581 1.03879 1.18420 0.92504 0.93225 0.88971 1.19724 1.01773 0.91905 1.32474 0.89160 1.26100 0.94191 1.02152 0.92486 1.69801 1.17034 1.32497 1.20635 0.86136 0.80270 0.80257 0.79532 1.17964 1.19614 1.19410 0.93246 0.93105 0.91394 0.79784 0.76793 0.88308 0.85489 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.58 36.01 0.34 -1.06 15 2 C 0.01 0.21 6.86 -81.81 -0.56 -0.35 15 3 N -0.45 -10.57 10.03 -5.40 -0.05 -10.63 15 4 C 0.03 0.65 6.76 -82.74 -0.56 0.09 15 5 C -0.10 -1.89 6.24 -104.70 -0.65 -2.54 15 6 C -0.01 -0.23 11.62 -16.69 -0.19 -0.43 15 7 N -0.38 -6.86 12.02 30.68 0.37 -6.49 15 8 O 0.09 1.47 11.16 17.70 0.20 1.67 15 9 C -0.08 -1.38 12.15 30.33 0.37 -1.01 15 10 C -0.12 -2.78 9.58 -39.54 -0.38 -3.16 15 11 C -0.14 -3.42 8.73 -39.02 -0.34 -3.76 15 12 C 0.07 1.83 5.58 -106.64 -0.59 1.24 15 13 C -0.43 -10.24 8.13 -37.87 -0.31 -10.55 15 14 H 0.09 2.02 6.87 -52.49 -0.36 1.66 15 15 C 0.07 1.61 5.18 -17.33 -0.09 1.53 15 16 N -0.78 -18.27 10.96 55.55 0.61 -17.66 15 17 Si 0.91 16.79 29.59 -169.99 -5.03 11.76 15 18 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 20 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.07 1.30 6.76 -51.93 -0.35 0.95 15 24 H 0.19 2.83 7.58 -52.49 -0.40 2.43 15 25 H 0.22 3.18 8.06 -52.49 -0.42 2.76 15 26 H 0.10 1.96 7.26 -52.49 -0.38 1.58 15 27 H 0.13 3.13 6.27 -52.48 -0.33 2.80 15 28 H 0.29 6.07 8.30 -40.82 -0.34 5.73 15 LS Contribution 252.86 15.07 3.81 3.81 Total: -1.00 -26.65 252.86 -5.29 -31.93 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.22 Total: 5.62 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.97 Total: -20.01 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.92 Total: -34.78 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.65 -5.29 -31.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239170833.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.873 kcal (2) G-P(sol) polarization free energy of solvation -26.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds