Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31289 * 119.79361 * 2 1 4 4 C 1.33058 * 121.70934 * 179.97438 * 3 2 1 5 5 C 1.47862 * 119.45330 * 179.97438 * 4 3 2 6 6 C 1.42555 * 128.21635 * 179.67719 * 5 4 3 7 7 N 1.29930 * 106.23106 * 179.89689 * 6 5 4 8 8 O 1.20824 * 112.09339 * 0.39556 * 7 6 5 9 9 C 1.33850 * 111.94462 * 359.74319 * 8 7 6 10 10 C 1.39987 * 121.08728 * 359.72771 * 4 3 2 11 11 C 1.36530 * 119.46097 * 0.55384 * 10 4 3 12 12 C 1.40913 * 119.79800 * 179.97438 * 2 1 3 13 13 C 1.41049 * 120.54859 * 359.97438 * 12 2 1 14 14 H 1.07994 * 119.99957 * 334.62267 * 13 12 2 15 15 C 1.39959 * 119.99687 * 154.62680 * 13 12 2 16 16 N 1.30833 * 120.00257 * 343.60142 * 15 13 12 17 17 Si 1.86806 * 119.99846 * 163.60882 * 15 13 12 18 18 H 1.48501 * 109.46733 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47407 * 119.99259 * 17 15 13 20 20 H 1.48498 * 109.46807 * 239.99857 * 17 15 13 21 21 H 1.09003 * 109.46742 * 270.01493 * 1 2 3 22 22 H 1.08995 * 109.47728 * 30.01699 * 1 2 3 23 23 H 1.08998 * 109.46990 * 150.02521 * 1 2 3 24 24 H 1.08000 * 126.88526 * 0.02562 * 6 5 4 25 25 H 1.08002 * 126.91731 * 180.02562 * 9 8 7 26 26 H 1.07995 * 120.26839 * 180.30705 * 10 4 3 27 27 H 1.08004 * 120.78298 * 179.73387 * 11 10 4 28 28 H 0.97001 * 120.00035 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1394 0.0000 4 6 3.4892 1.1838 0.0005 5 6 4.1728 2.4949 -0.0001 6 6 5.5737 2.7591 0.0066 7 7 5.6994 4.0523 0.0008 8 8 4.6291 4.6129 -0.0004 9 6 3.6099 3.7453 -0.0010 10 6 4.2517 0.0099 0.0068 11 6 3.6206 -1.2008 0.0009 12 6 2.2073 -1.2228 0.0005 13 6 1.5095 -2.4486 0.0016 14 1 0.5081 -2.4995 0.4029 15 6 2.1148 -3.5989 -0.5172 16 7 3.1709 -3.4939 -1.2824 17 14 1.4148 -5.2840 -0.1174 18 1 0.2275 -5.1310 0.7613 19 1 1.0157 -5.9654 -1.3750 20 1 2.4449 -6.0952 0.5798 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5134 24 1 6.3707 2.0304 0.0129 25 1 2.5562 3.9822 -0.0025 26 1 5.3304 0.0614 0.0121 27 1 4.1878 -2.1199 0.0013 28 1 3.5902 -4.2912 -1.6423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239170833.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = 59.372297 kcal Electronic energy + Delta-G solvation = -14958.730293 eV Core-core repulsion = 12362.641003 eV Total energy + Delta-G solvation = -2596.089290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.73559 -40.35571 -36.29257 -35.03987 -33.33392 -32.89285 -31.77363 -28.74616 -27.36349 -24.57774 -23.76222 -22.03696 -21.85310 -19.29135 -18.88325 -18.40923 -17.39683 -16.60889 -16.44803 -15.65527 -14.97014 -14.93003 -14.30437 -13.90793 -13.58316 -13.42153 -13.30318 -13.12020 -12.79621 -12.63766 -12.42192 -12.18957 -11.61787 -11.45117 -11.16932 -10.61911 -10.17559 -9.99039 -9.13628 -8.73958 -6.41134 0.24517 0.81373 1.03087 1.35228 1.41366 1.56063 1.77720 2.16457 2.39750 2.74830 3.40592 3.66594 3.68139 4.02696 4.35256 4.37418 4.58780 4.73336 4.89038 5.00382 5.01868 5.04443 5.07675 5.17190 5.28358 5.51614 5.79031 5.93534 5.98703 6.46083 6.69513 6.75979 7.34444 7.66843 8.17136 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049994 B = 0.006455 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.938097 B = 4336.962002 C = 4820.564511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.011 4.011 3 N -0.459 5.459 4 C 0.025 3.975 5 C -0.134 4.134 6 C -0.006 4.006 7 N -0.388 5.388 8 O 0.092 5.908 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.161 4.161 12 C 0.043 3.957 13 C -0.455 4.455 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.810 5.810 17 Si 0.987 3.013 18 H -0.251 1.251 19 H -0.266 1.266 20 H -0.266 1.266 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.206 0.794 25 H 0.240 0.760 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 2.278 1.712 3.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.156 4.156 3 N -0.168 5.168 4 C -0.110 4.110 5 C -0.138 4.138 6 C -0.185 4.185 7 N -0.093 5.093 8 O 0.029 5.971 9 C -0.132 4.132 10 C -0.151 4.151 11 C -0.186 4.186 12 C 0.039 3.961 13 C -0.483 4.483 14 H 0.115 0.885 15 C -0.183 4.183 16 N -0.434 5.434 17 Si 0.807 3.193 18 H -0.174 1.174 19 H -0.191 1.191 20 H -0.191 1.191 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.223 0.777 25 H 0.256 0.744 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.351 3.769 1.555 4.092 hybrid contribution 0.075 -2.394 -0.060 2.396 sum -0.276 1.375 1.495 2.050 Atomic orbital electron populations 1.20257 0.88487 1.01938 1.01547 1.21545 0.96983 0.87638 1.09396 1.66779 1.08703 1.30576 1.10739 1.18094 0.88840 0.89733 1.14319 1.19928 0.92722 0.93465 1.07724 1.25296 0.96965 0.92925 1.03345 1.73581 1.05555 1.09809 1.20385 1.84612 1.10243 1.34645 1.67615 1.26426 0.95988 0.87232 1.03530 1.21431 0.99766 0.92865 1.01049 1.21336 0.95062 0.96900 1.05335 1.18779 0.93000 0.94353 0.90009 1.19973 1.02395 0.92469 1.33511 0.88495 1.26934 0.94268 1.05471 0.91672 1.69844 1.18243 1.33902 1.21404 0.85066 0.79560 0.75344 0.79353 1.17407 1.19051 1.19073 0.91799 0.91825 0.91343 0.77729 0.74369 0.85995 0.86582 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.50 9.58 71.24 0.68 -1.82 15 2 C -0.01 -0.51 6.86 43.30 0.30 -0.22 15 3 N -0.46 -21.35 10.03 -170.98 -1.72 -23.06 15 4 C 0.03 1.14 6.76 41.93 0.28 1.43 15 5 C -0.13 -5.07 6.24 -19.92 -0.12 -5.19 15 6 C -0.01 -0.21 11.62 86.05 1.00 0.79 15 7 N -0.39 -13.15 12.02 -57.91 -0.70 -13.85 15 8 O 0.09 2.93 11.16 73.53 0.82 3.75 15 9 C -0.05 -1.60 12.15 67.56 0.82 -0.77 15 10 C -0.13 -5.95 9.58 22.29 0.21 -5.74 15 11 C -0.16 -8.06 8.73 22.63 0.20 -7.87 15 12 C 0.04 2.19 5.58 -21.17 -0.12 2.07 15 13 C -0.46 -21.91 8.13 23.38 0.19 -21.72 15 14 H 0.10 4.35 6.87 -2.91 -0.02 4.33 15 15 C 0.03 1.55 5.18 85.26 0.44 1.99 15 16 N -0.81 -38.68 10.96 21.83 0.24 -38.45 15 17 Si 0.99 34.04 29.59 68.60 2.03 36.07 15 18 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 19 H -0.27 -8.87 7.11 99.48 0.71 -8.17 15 20 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.07 2.59 6.76 -2.39 -0.02 2.58 15 24 H 0.21 5.84 7.58 -2.91 -0.02 5.82 15 25 H 0.24 6.35 8.06 -2.91 -0.02 6.33 15 26 H 0.12 4.77 7.26 -2.91 -0.02 4.75 15 27 H 0.12 5.93 6.27 -2.91 -0.02 5.91 15 28 H 0.29 12.59 8.30 -92.71 -0.77 11.82 15 Total: -1.00 -56.42 252.86 5.75 -50.67 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.19 Total: 21.92 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 3.88 Total: -37.05 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.17 Total: -75.35 kcal Atomic # 8 Polarization: 2.93 SS G_CDS: 0.82 Total: 3.75 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Total: -56.42 5.75 -50.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239170833.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.042 kcal (2) G-P(sol) polarization free energy of solvation -56.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds