Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38846 * 119.24323 * 2 1 4 4 C 1.36904 * 119.81802 * 180.28132 * 3 2 1 5 5 C 1.41087 * 118.40027 * 359.45008 * 4 3 2 6 6 C 1.40863 * 120.71967 * 180.25745 * 5 4 3 7 7 H 1.07997 * 120.00134 * 151.76159 * 6 5 4 8 8 C 1.40018 * 119.99669 * 331.75954 * 6 5 4 9 9 N 1.30812 * 119.99835 * 347.41971 * 8 6 5 10 10 Si 1.86801 * 119.99715 * 167.41848 * 8 6 5 11 11 H 1.48505 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47013 * 119.99949 * 10 8 6 13 13 H 1.48498 * 109.47037 * 240.00074 * 10 8 6 14 14 C 1.41944 * 118.56068 * 0.27914 * 5 4 3 15 15 C 1.47695 * 120.00124 * 179.97438 * 14 5 4 16 16 C 1.42610 * 128.23028 * 144.99883 * 15 14 5 17 17 N 1.29917 * 106.21475 * 180.02562 * 16 15 14 18 18 O 1.20807 * 112.12988 * 359.97438 * 17 16 15 19 19 C 1.33846 * 111.96364 * 359.72296 * 18 17 16 20 20 N 1.31760 * 119.24664 * 179.72218 * 2 1 3 21 21 H 1.08994 * 109.47020 * 270.27376 * 1 2 3 22 22 H 1.09002 * 109.46946 * 30.27671 * 1 2 3 23 23 H 1.09000 * 109.46470 * 150.27186 * 1 2 3 24 24 H 1.08001 * 120.09526 * 0.02562 * 3 2 1 25 25 H 1.07990 * 120.79716 * 179.72813 * 4 3 2 26 26 H 0.97008 * 119.99668 * 180.02562 * 9 8 6 27 27 H 1.07991 * 126.89192 * 359.97438 * 16 15 14 28 28 H 1.08001 * 126.92268 * 180.32265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1854 1.2115 0.0000 4 6 3.5543 1.2252 -0.0058 5 6 4.2378 -0.0090 0.0002 6 6 5.6458 -0.0518 0.0000 7 1 6.1606 -0.8896 0.4466 8 6 6.3778 0.9918 -0.5792 9 7 5.7738 1.8760 -1.3304 10 14 8.2170 1.1213 -0.2790 11 1 8.6551 0.0063 0.5986 12 1 8.9369 1.0422 -1.5755 13 1 8.5213 2.4179 0.3778 14 6 3.4759 -1.2066 0.0059 15 6 4.1587 -2.5163 0.0117 16 6 3.7532 -3.7200 0.6600 17 7 4.6640 -4.6047 0.3849 18 8 5.5423 -4.1526 -0.3106 19 6 5.3308 -2.8655 -0.6105 20 7 2.1508 -1.1496 0.0056 21 1 -0.3633 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3632 -0.8924 -0.5096 24 1 1.6346 2.1405 0.0004 25 1 4.0979 2.1584 -0.0103 26 1 6.2810 2.5988 -1.7320 27 1 2.8673 -3.8666 1.2599 28 1 5.9577 -2.2293 -1.2177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239172883.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = 61.106192 kcal Electronic energy + Delta-G solvation = -15304.899894 eV Core-core repulsion = 12708.885792 eV Total energy + Delta-G solvation = -2596.014102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.67247 -40.34756 -36.20147 -35.18852 -33.30778 -32.62378 -31.61251 -29.51651 -26.53116 -24.74221 -23.51530 -22.57177 -21.61969 -19.41214 -18.66209 -18.35964 -17.31201 -16.77611 -16.12938 -15.64291 -15.06460 -14.89516 -14.21412 -13.94220 -13.75387 -13.48104 -13.14070 -12.98839 -12.89648 -12.62244 -12.27725 -12.17676 -11.69345 -11.29766 -11.20108 -10.62054 -10.01201 -9.95194 -9.18583 -8.68825 -6.42947 0.35453 0.81155 0.99855 1.43245 1.51049 1.57020 1.69534 2.18357 2.43048 2.72389 3.39488 3.65000 3.96029 4.05745 4.33010 4.42295 4.62837 4.72699 4.93548 4.98470 5.00816 5.04687 5.14989 5.22239 5.28720 5.35383 5.79670 5.92975 6.04678 6.47051 6.72481 6.77293 7.39458 7.69444 8.22886 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.013211 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.757236 B = 2118.967116 C = 3619.331995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.012 4.012 3 C -0.148 4.148 4 C -0.143 4.143 5 C 0.057 3.943 6 C -0.466 4.466 7 H 0.091 0.909 8 C 0.042 3.958 9 N -0.815 5.815 10 Si 0.979 3.021 11 H -0.255 1.255 12 H -0.262 1.262 13 H -0.268 1.268 14 C 0.030 3.970 15 C -0.125 4.125 16 C 0.002 3.998 17 N -0.392 5.392 18 O 0.090 5.910 19 C -0.044 4.044 20 N -0.468 5.468 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.294 0.706 27 H 0.197 0.803 28 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 -0.327 0.658 0.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.169 4.169 5 C 0.052 3.948 6 C -0.495 4.495 7 H 0.109 0.891 8 C -0.175 4.175 9 N -0.439 5.439 10 Si 0.799 3.201 11 H -0.179 1.179 12 H -0.187 1.187 13 H -0.193 1.193 14 C -0.107 4.107 15 C -0.130 4.130 16 C -0.177 4.177 17 N -0.098 5.098 18 O 0.028 5.972 19 C -0.126 4.126 20 N -0.177 5.177 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.105 0.895 27 H 0.214 0.786 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.131 -2.182 0.821 2.335 hybrid contribution 0.766 2.037 -0.058 2.177 sum 0.635 -0.146 0.763 1.003 Atomic orbital electron populations 1.20365 0.88012 1.02355 1.02056 1.21067 0.97249 0.87940 1.09175 1.21602 0.94991 0.98662 1.01503 1.21476 0.93664 0.98394 1.03393 1.18629 0.95114 0.91205 0.89827 1.19800 0.90904 1.06340 1.32444 0.89103 1.26747 1.05725 0.93234 0.91844 1.69803 1.40704 1.11808 1.21633 0.85174 0.75800 0.79577 0.79515 1.17867 1.18655 1.19269 1.18760 0.88489 0.89929 1.13549 1.19737 0.96899 0.94000 1.02362 1.25258 1.00678 0.89216 1.02519 1.73518 1.00653 1.24027 1.11650 1.84617 1.38487 1.23786 1.50330 1.26564 0.99542 0.84389 1.02126 1.66888 1.09516 1.30341 1.10968 0.91325 0.90383 0.92301 0.85304 0.86301 0.89545 0.78589 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.24 0.72 -1.56 15 2 C -0.01 -0.52 6.79 42.72 0.29 -0.23 15 3 C -0.15 -6.43 9.64 22.10 0.21 -6.22 15 4 C -0.14 -7.00 8.71 22.66 0.20 -6.80 15 5 C 0.06 2.85 5.58 -21.02 -0.12 2.74 15 6 C -0.47 -22.11 7.18 23.34 0.17 -21.94 15 7 H 0.09 4.15 6.21 -2.91 -0.02 4.13 15 8 C 0.04 1.84 5.24 85.28 0.45 2.29 15 9 N -0.81 -37.90 10.94 21.84 0.24 -37.66 15 10 Si 0.98 33.78 29.58 68.60 2.03 35.81 15 11 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 12 H -0.26 -8.65 7.11 99.48 0.71 -7.94 15 13 H -0.27 -9.11 7.11 99.48 0.71 -8.40 15 14 C 0.03 1.48 6.79 42.44 0.29 1.77 15 15 C -0.13 -5.47 5.71 -19.93 -0.11 -5.59 15 16 C 0.00 0.09 12.21 86.07 1.05 1.14 15 17 N -0.39 -15.18 12.02 -57.85 -0.70 -15.88 15 18 O 0.09 3.33 11.16 73.59 0.82 4.16 15 19 C -0.04 -1.69 10.31 67.58 0.70 -1.00 15 20 N -0.47 -22.29 10.20 -171.16 -1.75 -24.03 15 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.08 2.14 8.07 -2.39 -0.02 2.13 15 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.13 4.72 8.06 -2.91 -0.02 4.70 15 25 H 0.12 5.91 6.35 -2.92 -0.02 5.89 15 26 H 0.29 12.28 8.30 -92.70 -0.77 11.51 15 27 H 0.20 7.00 8.06 -2.92 -0.02 6.98 15 28 H 0.24 8.30 7.05 -2.91 -0.02 8.28 15 Total: -1.00 -55.58 251.90 5.68 -49.90 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.19 Total: 23.10 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.84 Total: -35.40 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.20 Total: -77.57 kcal Atomic # 8 Polarization: 3.33 SS G_CDS: 0.82 Total: 4.16 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Total: -55.58 5.68 -49.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239172883.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.007 kcal (2) G-P(sol) polarization free energy of solvation -55.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds