Wall clock time and date at job start Sun Mar 29 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36172 * 119.95212 * 2 1 4 4 C 1.40972 * 119.90119 * 179.75011 * 3 2 1 5 5 C 1.40936 * 120.09370 * 180.27758 * 4 3 2 6 6 H 1.07999 * 119.99959 * 204.85224 * 5 4 3 7 7 C 1.40021 * 119.99953 * 24.84130 * 5 4 3 8 8 N 1.30794 * 120.00490 * 17.87179 * 7 5 4 9 9 Si 1.86798 * 120.00094 * 197.86446 * 7 5 4 10 10 H 1.48504 * 109.47194 * 60.00439 * 9 7 5 11 11 H 1.48497 * 109.47412 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47274 * 300.00553 * 9 7 5 13 13 C 1.41004 * 119.81057 * 0.46027 * 4 3 2 14 14 C 1.36139 * 119.90118 * 359.53860 * 13 4 3 15 15 C 1.40171 * 119.95316 * 179.97438 * 2 1 3 16 16 C 1.47280 * 119.89962 * 359.97438 * 15 2 1 17 17 C 1.33440 * 125.98923 * 285.04461 * 16 15 2 18 18 C 1.51193 * 108.02695 * 180.02562 * 17 16 15 19 19 O 1.43986 * 105.80554 * 17.50575 * 18 17 16 20 20 C 1.44178 * 103.95754 * 332.06294 * 19 18 17 21 21 H 1.09005 * 109.46689 * 270.02134 * 1 2 3 22 22 H 1.08996 * 109.47340 * 30.01701 * 1 2 3 23 23 H 1.08999 * 109.47386 * 150.02209 * 1 2 3 24 24 H 1.08001 * 120.05079 * 0.02562 * 3 2 1 25 25 H 0.96996 * 120.00171 * 179.97438 * 8 7 5 26 26 H 1.07999 * 120.04845 * 179.81663 * 13 4 3 27 27 H 1.07993 * 119.95332 * 180.25400 * 14 13 4 28 28 H 1.08005 * 125.98193 * 0.02562 * 17 16 15 29 29 H 1.08993 * 110.18118 * 136.59077 * 18 17 16 30 30 H 1.08996 * 110.18162 * 258.35210 * 18 17 16 31 31 H 1.09001 * 110.34751 * 268.95654 * 20 19 18 32 32 H 1.08993 * 110.10889 * 147.06823 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1786 0.0053 5 6 4.3043 2.3974 0.0113 6 1 5.3109 2.4392 -0.3779 7 6 3.7023 3.5540 0.5215 8 7 2.6536 3.4579 1.2971 9 14 4.3972 5.2346 0.0947 10 1 4.3558 5.4282 -1.3771 11 1 3.5860 6.2882 0.7559 12 1 5.8025 5.3236 0.5663 13 6 4.2965 -0.0454 0.0008 14 6 3.6088 -1.2204 0.0008 15 6 2.2068 -1.2145 0.0005 16 6 1.4671 -2.4881 0.0017 17 6 0.8314 -3.0247 1.0450 18 6 0.2141 -4.3298 0.5960 19 8 0.8885 -4.6826 -0.6263 20 6 1.2902 -3.4137 -1.1806 21 1 -0.3633 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6469 2.1152 0.0004 25 1 2.2368 4.2591 1.6509 26 1 5.3764 -0.0509 0.0019 27 1 4.1440 -2.1584 0.0015 28 1 0.7688 -2.6009 2.0364 29 1 0.3742 -5.1005 1.3498 30 1 -0.8524 -4.1983 0.4138 31 1 0.5177 -3.0295 -1.8467 32 1 2.2321 -3.5211 -1.7185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239490559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:25 Heat of formation + Delta-G solvation = -15.727238 kcal Electronic energy + Delta-G solvation = -15324.601874 eV Core-core repulsion = 12828.796368 eV Total energy + Delta-G solvation = -2495.805506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51619 -37.65615 -34.17195 -32.28600 -31.38791 -29.50623 -28.12097 -25.90730 -25.23552 -22.73078 -21.15316 -19.95605 -18.56057 -17.16306 -16.19363 -15.74638 -15.24415 -14.53079 -13.88225 -13.75434 -13.28335 -12.89517 -12.58721 -12.25424 -11.99696 -11.88583 -11.73310 -11.44100 -11.40724 -11.14837 -10.87954 -10.61458 -10.37715 -9.97647 -9.67455 -9.49878 -9.22672 -8.18931 -7.43681 -7.30886 -6.86586 -4.43459 2.35581 2.71420 3.00649 3.02765 3.04648 3.13472 3.84824 4.28985 4.47748 5.04719 5.35589 5.59415 5.62467 5.64159 5.73322 5.92736 6.00354 6.08258 6.25142 6.32956 6.40467 6.60127 6.67308 6.81964 6.92881 6.97380 7.22280 7.22963 7.33212 7.56558 7.84658 7.97654 8.06041 8.21197 8.53601 8.78658 8.89718 10.06093 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.055048 B = 0.006162 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.528034 B = 4543.001706 C = 4820.878757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.048 4.048 3 C -0.168 4.168 4 C 0.118 3.882 5 C -0.456 4.456 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.784 5.784 9 Si 0.910 3.090 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.232 4.232 14 C -0.063 4.063 15 C -0.196 4.196 16 C -0.050 4.050 17 C -0.231 4.231 18 C 0.077 3.923 19 O -0.376 6.376 20 C 0.071 3.929 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.119 0.881 25 H 0.283 0.717 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -4.897 -1.210 6.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.048 4.048 3 C -0.187 4.187 4 C 0.116 3.884 5 C -0.484 4.484 6 H 0.098 0.902 7 C -0.143 4.143 8 N -0.409 5.409 9 Si 0.734 3.266 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.252 4.252 14 C -0.082 4.082 15 C -0.198 4.198 16 C -0.050 4.050 17 C -0.249 4.249 18 C 0.000 4.000 19 O -0.295 6.295 20 C -0.005 4.005 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.137 0.863 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.157 0.843 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.910 -4.972 -1.156 6.430 hybrid contribution 0.254 1.040 0.110 1.076 sum -3.655 -3.932 -1.047 5.470 Atomic orbital electron populations 1.20656 0.93825 1.00557 1.00743 1.19240 0.93654 0.92656 0.99284 1.20839 0.94278 0.96072 1.07554 1.17674 0.92034 0.92094 0.86622 1.19577 1.01203 0.92578 1.35091 0.90248 1.25978 0.94189 1.01635 0.92519 1.69807 1.17872 1.31864 1.21327 0.86342 0.79907 0.80330 0.80061 1.18681 1.20235 1.18882 1.20626 0.97751 0.92517 1.14290 1.20252 0.92490 0.96484 0.98942 1.17429 0.92040 0.89017 1.21275 1.21414 0.95340 0.94675 0.93559 1.24421 1.02884 0.97811 0.99767 1.22036 0.95779 0.95480 0.86664 1.89096 1.76207 1.27217 1.36969 1.22278 1.00290 0.82450 0.95518 0.92652 0.92880 0.93299 0.86322 0.90596 0.88869 0.89356 0.84327 0.89963 0.92084 0.91317 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.52 36.00 0.34 -1.58 16 2 C -0.05 -1.10 5.87 -104.64 -0.61 -1.71 16 3 C -0.17 -4.27 8.25 -39.29 -0.32 -4.59 16 4 C 0.12 3.10 5.57 -106.79 -0.60 2.51 16 5 C -0.46 -11.79 9.03 -37.89 -0.34 -12.14 16 6 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 7 C 0.08 1.85 5.13 -17.33 -0.09 1.76 16 8 N -0.78 -19.71 10.96 55.55 0.61 -19.10 16 9 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 11 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 13 C -0.23 -5.65 9.73 -39.29 -0.38 -6.03 16 14 C -0.06 -1.43 9.71 -39.60 -0.38 -1.82 16 15 C -0.20 -4.32 5.75 -104.76 -0.60 -4.92 16 16 C -0.05 -0.93 4.14 -102.38 -0.42 -1.35 16 17 C -0.23 -3.88 10.92 -35.74 -0.39 -4.28 16 18 C 0.08 1.12 7.64 36.25 0.28 1.40 16 19 O -0.38 -6.32 11.80 -35.23 -0.42 -6.74 16 20 C 0.07 1.19 7.62 36.25 0.28 1.46 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 23 H 0.05 0.85 7.07 -51.93 -0.37 0.49 16 24 H 0.12 3.10 6.17 -52.49 -0.32 2.78 16 25 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 274.96 15.07 4.14 4.14 Total: -1.00 -26.82 274.96 -7.99 -34.81 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.04 Total: 5.12 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -3.25 Total: -31.29 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.61 Total: -19.10 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.42 Total: -6.74 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.82 -7.99 -34.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239490559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.083 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds