Wall clock time and date at job start Sun Mar 29 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36172 * 119.95212 * 2 1 4 4 C 1.40972 * 119.90119 * 179.75011 * 3 2 1 5 5 C 1.40936 * 120.09370 * 180.27758 * 4 3 2 6 6 H 1.07999 * 119.99959 * 204.85224 * 5 4 3 7 7 C 1.40021 * 119.99953 * 24.84130 * 5 4 3 8 8 N 1.30794 * 120.00490 * 17.87179 * 7 5 4 9 9 Si 1.86798 * 120.00094 * 197.86446 * 7 5 4 10 10 H 1.48504 * 109.47194 * 60.00439 * 9 7 5 11 11 H 1.48497 * 109.47412 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47274 * 300.00553 * 9 7 5 13 13 C 1.41004 * 119.81057 * 0.46027 * 4 3 2 14 14 C 1.36139 * 119.90118 * 359.53860 * 13 4 3 15 15 C 1.40171 * 119.95316 * 179.97438 * 2 1 3 16 16 C 1.47280 * 119.89962 * 359.97438 * 15 2 1 17 17 C 1.33440 * 125.98923 * 285.04461 * 16 15 2 18 18 C 1.51193 * 108.02695 * 180.02562 * 17 16 15 19 19 O 1.43986 * 105.80554 * 17.50575 * 18 17 16 20 20 C 1.44178 * 103.95754 * 332.06294 * 19 18 17 21 21 H 1.09005 * 109.46689 * 270.02134 * 1 2 3 22 22 H 1.08996 * 109.47340 * 30.01701 * 1 2 3 23 23 H 1.08999 * 109.47386 * 150.02209 * 1 2 3 24 24 H 1.08001 * 120.05079 * 0.02562 * 3 2 1 25 25 H 0.96996 * 120.00171 * 179.97438 * 8 7 5 26 26 H 1.07999 * 120.04845 * 179.81663 * 13 4 3 27 27 H 1.07993 * 119.95332 * 180.25400 * 14 13 4 28 28 H 1.08005 * 125.98193 * 0.02562 * 17 16 15 29 29 H 1.08993 * 110.18118 * 136.59077 * 18 17 16 30 30 H 1.08996 * 110.18162 * 258.35210 * 18 17 16 31 31 H 1.09001 * 110.34751 * 268.95654 * 20 19 18 32 32 H 1.08993 * 110.10889 * 147.06823 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1786 0.0053 5 6 4.3043 2.3974 0.0113 6 1 5.3109 2.4392 -0.3779 7 6 3.7023 3.5540 0.5215 8 7 2.6536 3.4579 1.2971 9 14 4.3972 5.2346 0.0947 10 1 4.3558 5.4282 -1.3771 11 1 3.5860 6.2882 0.7559 12 1 5.8025 5.3236 0.5663 13 6 4.2965 -0.0454 0.0008 14 6 3.6088 -1.2204 0.0008 15 6 2.2068 -1.2145 0.0005 16 6 1.4671 -2.4881 0.0017 17 6 0.8314 -3.0247 1.0450 18 6 0.2141 -4.3298 0.5960 19 8 0.8885 -4.6826 -0.6263 20 6 1.2902 -3.4137 -1.1806 21 1 -0.3633 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6469 2.1152 0.0004 25 1 2.2368 4.2591 1.6509 26 1 5.3764 -0.0509 0.0019 27 1 4.1440 -2.1584 0.0015 28 1 0.7688 -2.6009 2.0364 29 1 0.3742 -5.1005 1.3498 30 1 -0.8524 -4.1983 0.4138 31 1 0.5177 -3.0295 -1.8467 32 1 2.2321 -3.5211 -1.7185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239490559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:25 Heat of formation + Delta-G solvation = -29.344859 kcal Electronic energy + Delta-G solvation = -15325.192378 eV Core-core repulsion = 12828.796368 eV Total energy + Delta-G solvation = -2496.396011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87037 -39.38258 -35.93737 -33.90053 -33.03410 -31.15472 -29.49850 -27.63490 -26.94770 -24.11686 -22.82423 -21.70606 -20.05218 -19.02818 -17.63169 -17.12027 -16.86647 -15.92137 -15.58165 -15.44946 -14.84197 -14.49086 -14.22815 -13.64749 -13.44290 -13.39262 -13.29411 -13.09926 -12.97220 -12.76420 -12.49131 -12.25031 -12.00790 -11.50457 -11.39830 -11.12327 -11.01879 -9.58438 -9.27747 -9.11126 -8.67576 -6.35489 0.76622 1.14145 1.17329 1.37650 1.48465 1.52956 2.18738 2.65378 3.07088 3.59808 3.76482 4.13593 4.33370 4.37869 4.47167 4.49214 4.51929 4.65262 4.71709 4.84054 4.89184 5.00307 5.10253 5.12776 5.32534 5.38907 5.45144 5.51787 5.72880 5.91034 6.05882 6.10148 6.22506 6.35807 6.66068 6.89540 7.01988 8.27573 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.055048 B = 0.006162 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.528034 B = 4543.001706 C = 4820.878757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.058 4.058 3 C -0.191 4.191 4 C 0.085 3.915 5 C -0.495 4.495 6 H 0.076 0.924 7 C 0.037 3.963 8 N -0.817 5.817 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.266 1.266 12 H -0.259 1.259 13 C -0.250 4.250 14 C -0.071 4.071 15 C -0.185 4.185 16 C -0.087 4.087 17 C -0.207 4.207 18 C 0.075 3.925 19 O -0.386 6.386 20 C 0.078 3.922 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.290 0.710 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -5.925 -1.142 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.211 4.211 4 C 0.083 3.917 5 C -0.524 4.524 6 H 0.095 0.905 7 C -0.179 4.179 8 N -0.442 5.442 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.190 1.190 12 H -0.184 1.184 13 C -0.269 4.269 14 C -0.089 4.089 15 C -0.186 4.186 16 C -0.087 4.087 17 C -0.225 4.225 18 C 0.000 4.000 19 O -0.306 6.306 20 C 0.002 3.998 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.031 -6.022 -1.085 7.922 hybrid contribution 0.533 1.170 0.155 1.295 sum -4.499 -4.852 -0.930 6.682 Atomic orbital electron populations 1.20633 0.91103 1.01721 1.01607 1.19680 0.95844 0.92221 0.98048 1.20827 0.94207 0.96542 1.09477 1.18046 0.92891 0.93049 0.87756 1.19811 1.01656 0.93850 1.37077 0.90545 1.26797 0.94372 1.05030 0.91704 1.69853 1.19070 1.33226 1.22042 0.85245 0.79304 0.75435 0.79714 1.18453 1.18994 1.18360 1.20802 0.98162 0.92880 1.15088 1.20557 0.93303 0.96683 0.98381 1.17759 0.92063 0.90410 1.18360 1.21297 0.97431 0.94374 0.95589 1.24717 1.00376 0.98183 0.99254 1.22260 0.96632 0.94731 0.86423 1.89093 1.76570 1.27082 1.37810 1.22189 1.00840 0.82012 0.94760 0.91774 0.92491 0.91332 0.87906 0.89893 0.88554 0.87242 0.83970 0.87502 0.89624 0.90157 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.45 9.52 71.23 0.68 -2.77 16 2 C -0.06 -2.63 5.87 -19.88 -0.12 -2.75 16 3 C -0.19 -10.00 8.25 22.46 0.19 -9.82 16 4 C 0.08 4.63 5.57 -21.27 -0.12 4.51 16 5 C -0.50 -26.71 9.03 23.36 0.21 -26.49 16 6 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 7 C 0.04 1.85 5.13 85.28 0.44 2.29 16 8 N -0.82 -42.17 10.96 21.84 0.24 -41.93 16 9 Si 0.98 37.58 29.60 68.60 2.03 39.61 16 10 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 11 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 C -0.25 -12.51 9.73 22.46 0.22 -12.29 16 14 C -0.07 -3.21 9.71 22.26 0.22 -2.99 16 15 C -0.18 -7.97 5.75 -19.95 -0.11 -8.08 16 16 C -0.09 -3.04 4.14 -18.42 -0.08 -3.12 16 17 C -0.21 -6.29 10.92 24.76 0.27 -6.02 16 18 C 0.08 1.87 7.64 71.39 0.55 2.42 16 19 O -0.39 -11.64 11.80 -148.98 -1.76 -13.40 16 20 C 0.08 2.41 7.62 71.39 0.54 2.95 16 21 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 22 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 23 H 0.07 2.22 7.07 -2.39 -0.02 2.20 16 24 H 0.10 5.60 6.17 -2.91 -0.02 5.59 16 25 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 26 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 27 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 28 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -58.56 274.96 4.50 -54.06 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.11 Total: 23.82 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 2.88 Total: -62.16 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.24 Total: -41.93 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.76 Total: -13.40 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -58.56 4.50 -54.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239490559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.714 kcal (2) G-P(sol) polarization free energy of solvation -58.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds