Wall clock time and date at job start Sun Mar 29 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47210 * 275.40920 * 3 2 1 5 5 H 1.48493 * 109.47213 * 35.41182 * 3 2 1 6 6 H 1.48503 * 109.46898 * 155.40723 * 3 2 1 7 7 C 1.39923 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00084 * 341.73834 * 7 2 1 9 9 C 1.41425 * 119.99908 * 161.74291 * 7 2 1 10 10 C 1.40801 * 120.18387 * 330.17227 * 9 7 2 11 11 C 1.37684 * 119.99653 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.37464 * 359.74007 * 11 10 9 13 13 C 1.39713 * 120.37311 * 0.52120 * 12 11 10 14 14 C 1.48385 * 119.99875 * 179.76310 * 13 12 11 15 15 C 1.39372 * 122.76980 * 359.70450 * 14 13 12 16 16 C 1.33049 * 114.91411 * 180.02562 * 15 14 13 17 17 S 1.75809 * 109.93453 * 359.97438 * 16 15 14 18 18 C 1.34566 * 122.77298 * 179.74782 * 14 13 12 19 19 C 1.38783 * 120.00021 * 359.48070 * 13 12 11 20 20 H 0.97003 * 119.99429 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.00101 * 0.04940 * 10 9 7 22 22 H 1.07992 * 119.81521 * 180.02562 * 11 10 9 23 23 H 1.08001 * 119.81220 * 180.27737 * 12 11 10 24 24 H 1.07998 * 122.53758 * 0.02562 * 15 14 13 25 25 H 1.08003 * 125.03497 * 180.02562 * 16 15 14 26 26 H 1.08004 * 125.22583 * 359.95749 * 18 14 13 27 27 H 1.08000 * 120.18640 * 180.27955 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4098 0.5827 7 6 2.0079 -1.2118 0.0005 8 1 1.5086 -2.1234 0.2940 9 6 3.3687 -1.2429 -0.3831 10 6 3.8627 -0.3110 -1.3159 11 6 5.1881 -0.3451 -1.6871 12 6 6.0431 -1.2888 -1.1441 13 6 5.5683 -2.2242 -0.2214 14 6 6.4909 -3.2354 0.3515 15 6 7.8391 -3.3083 0.0057 16 6 8.5220 -4.2753 0.6130 17 16 7.4610 -5.1731 1.6897 18 6 6.0948 -4.1583 1.2471 19 6 4.2352 -2.2040 0.1638 20 1 -0.4849 0.8401 -0.0004 21 1 3.2020 0.4308 -1.7399 22 1 5.5640 0.3713 -2.4025 23 1 7.0821 -1.3044 -1.4384 24 1 8.2948 -2.6312 -0.7015 25 1 9.5727 -4.4781 0.4669 26 1 5.0919 -4.2597 1.6352 27 1 3.8660 -2.9229 0.8803 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239510584.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:41 Heat of formation + Delta-G solvation = 43.781640 kcal Electronic energy + Delta-G solvation = -12789.924490 eV Core-core repulsion = 10603.619258 eV Total energy + Delta-G solvation = -2186.305231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.60827 -36.68000 -33.56078 -30.81751 -30.44125 -28.06210 -25.42296 -23.65501 -21.33189 -20.44397 -18.71335 -17.67864 -16.59542 -15.92790 -14.97057 -14.51374 -13.78224 -13.21440 -13.00689 -12.91619 -12.72183 -12.19498 -11.95015 -11.82831 -11.50463 -10.90701 -10.73446 -10.66858 -10.31288 -9.81328 -9.60388 -9.21602 -8.78902 -8.41681 -7.71497 -7.15254 -6.95804 -4.51094 1.18528 1.92001 2.23204 2.26386 2.59555 3.09516 3.20779 3.29333 3.50028 3.97746 4.54853 5.13902 5.40819 5.46981 5.67873 5.78612 6.03500 6.16339 6.25040 6.44646 6.55314 6.61949 6.79610 6.96014 7.12693 7.37700 7.56858 7.71886 7.83210 8.06010 8.33073 8.61321 8.78260 10.06775 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.044944 B = 0.006818 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.847290 B = 4105.971518 C = 4525.257799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.092 3.908 10 C -0.232 4.232 11 C -0.080 4.080 12 C -0.225 4.225 13 C -0.009 4.009 14 C -0.042 4.042 15 C -0.117 4.117 16 C -0.221 4.221 17 S 0.064 5.936 18 C -0.209 4.209 19 C -0.187 4.187 20 H 0.285 0.715 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.141 0.859 25 H 0.160 0.840 26 H 0.166 0.834 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 -4.060 1.199 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.479 4.479 8 H 0.108 0.892 9 C 0.089 3.911 10 C -0.252 4.252 11 C -0.098 4.098 12 C -0.245 4.245 13 C -0.011 4.011 14 C -0.054 4.054 15 C -0.148 4.148 16 C -0.355 4.355 17 S 0.327 5.673 18 C -0.344 4.344 19 C -0.207 4.207 20 H 0.095 0.905 21 H 0.118 0.882 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.158 0.842 25 H 0.177 0.823 26 H 0.184 0.816 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.369 -5.237 2.219 12.712 hybrid contribution -0.009 1.961 -0.997 2.200 sum 11.359 -3.276 1.223 11.885 Atomic orbital electron populations 1.69703 1.08081 1.30220 1.35370 1.26133 0.94696 1.01698 0.90863 0.86323 0.81351 0.79814 0.78815 1.19651 1.21845 1.16726 1.19462 0.93110 0.96154 1.39124 0.89169 1.17649 0.92990 0.90824 0.89671 1.21114 0.95671 1.04661 1.03743 1.20536 0.93772 0.97235 0.98289 1.20404 0.98223 1.00845 1.05049 1.18092 0.92351 0.93866 0.96791 1.18169 0.93439 0.96586 0.97185 1.20259 0.93579 0.99311 1.01648 1.25350 1.03290 1.02329 1.04581 1.83959 1.01540 1.36257 1.45516 1.25711 1.02309 1.01068 1.05289 1.21079 0.91827 1.03844 1.03962 0.90472 0.88166 0.88609 0.88569 0.84160 0.82277 0.81617 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 13.93 55.55 0.77 -20.82 15 2 C 0.08 2.22 5.40 -17.35 -0.09 2.13 15 3 Si 0.91 20.81 24.52 -169.99 -4.17 16.65 15 4 H -0.27 -5.98 6.71 56.52 0.38 -5.60 15 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.24 -5.74 6.86 56.52 0.39 -5.35 15 7 C -0.45 -12.15 9.57 -37.74 -0.36 -12.51 15 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 15 9 C 0.09 2.32 5.10 -106.87 -0.55 1.77 15 10 C -0.23 -5.59 7.17 -38.82 -0.28 -5.87 15 11 C -0.08 -1.72 10.01 -39.71 -0.40 -2.12 15 12 C -0.23 -4.65 9.50 -38.96 -0.37 -5.02 15 13 C -0.01 -0.18 5.87 -104.97 -0.62 -0.80 15 14 C -0.04 -0.77 5.79 -106.60 -0.62 -1.39 15 15 C -0.12 -1.82 9.53 -40.96 -0.39 -2.21 15 16 C -0.22 -2.93 11.19 28.93 0.32 -2.60 15 17 S 0.06 0.87 23.32 -107.50 -2.51 -1.64 15 18 C -0.21 -3.46 10.51 29.43 0.31 -3.15 15 19 C -0.19 -4.36 9.22 -38.53 -0.36 -4.71 15 20 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 21 H 0.10 2.40 4.72 -52.48 -0.25 2.15 15 22 H 0.10 1.78 8.06 -52.49 -0.42 1.35 15 23 H 0.10 1.71 6.52 -52.49 -0.34 1.37 15 24 H 0.14 1.97 6.69 -52.49 -0.35 1.62 15 25 H 0.16 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.17 2.65 6.80 -52.48 -0.36 2.29 15 27 H 0.10 2.24 6.60 -52.49 -0.35 1.89 15 LS Contribution 245.10 15.07 3.69 3.69 Total: -1.00 -27.35 245.10 -7.68 -35.03 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.08 Total: 3.57 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: -3.39 Total: -36.48 kcal Atomic # 7 Polarization: -21.59 SS G_CDS: 0.77 Total: -20.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.17 Total: 16.65 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.35 -7.68 -35.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239510584.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.811 kcal (2) G-P(sol) polarization free energy of solvation -27.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds