Wall clock time and date at job start Sun Mar 29 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47210 * 275.40920 * 3 2 1 5 5 H 1.48493 * 109.47213 * 35.41182 * 3 2 1 6 6 H 1.48503 * 109.46898 * 155.40723 * 3 2 1 7 7 C 1.39923 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00084 * 341.73834 * 7 2 1 9 9 C 1.41425 * 119.99908 * 161.74291 * 7 2 1 10 10 C 1.40801 * 120.18387 * 330.17227 * 9 7 2 11 11 C 1.37684 * 119.99653 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.37464 * 359.74007 * 11 10 9 13 13 C 1.39713 * 120.37311 * 0.52120 * 12 11 10 14 14 C 1.48385 * 119.99875 * 179.76310 * 13 12 11 15 15 C 1.39372 * 122.76980 * 359.70450 * 14 13 12 16 16 C 1.33049 * 114.91411 * 180.02562 * 15 14 13 17 17 S 1.75809 * 109.93453 * 359.97438 * 16 15 14 18 18 C 1.34566 * 122.77298 * 179.74782 * 14 13 12 19 19 C 1.38783 * 120.00021 * 359.48070 * 13 12 11 20 20 H 0.97003 * 119.99429 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.00101 * 0.04940 * 10 9 7 22 22 H 1.07992 * 119.81521 * 180.02562 * 11 10 9 23 23 H 1.08001 * 119.81220 * 180.27737 * 12 11 10 24 24 H 1.07998 * 122.53758 * 0.02562 * 15 14 13 25 25 H 1.08003 * 125.03497 * 180.02562 * 16 15 14 26 26 H 1.08004 * 125.22583 * 359.95749 * 18 14 13 27 27 H 1.08000 * 120.18640 * 180.27955 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4098 0.5827 7 6 2.0079 -1.2118 0.0005 8 1 1.5086 -2.1234 0.2940 9 6 3.3687 -1.2429 -0.3831 10 6 3.8627 -0.3110 -1.3159 11 6 5.1881 -0.3451 -1.6871 12 6 6.0431 -1.2888 -1.1441 13 6 5.5683 -2.2242 -0.2214 14 6 6.4909 -3.2354 0.3515 15 6 7.8391 -3.3083 0.0057 16 6 8.5220 -4.2753 0.6130 17 16 7.4610 -5.1731 1.6897 18 6 6.0948 -4.1583 1.2471 19 6 4.2352 -2.2040 0.1638 20 1 -0.4849 0.8401 -0.0004 21 1 3.2020 0.4308 -1.7399 22 1 5.5640 0.3713 -2.4025 23 1 7.0821 -1.3044 -1.4384 24 1 8.2948 -2.6312 -0.7015 25 1 9.5727 -4.4781 0.4669 26 1 5.0919 -4.2597 1.6352 27 1 3.8660 -2.9229 0.8803 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239510584.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:41 Heat of formation + Delta-G solvation = 29.125824 kcal Electronic energy + Delta-G solvation = -12790.560013 eV Core-core repulsion = 10603.619258 eV Total energy + Delta-G solvation = -2186.940755 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15539 -38.16637 -35.44658 -32.41655 -32.17448 -29.47214 -27.24973 -25.11783 -22.92085 -22.13466 -20.19703 -19.12219 -18.17988 -17.54224 -16.60627 -16.12491 -15.53562 -14.79197 -14.59934 -14.33947 -14.17129 -13.69156 -13.60466 -13.22479 -13.09777 -12.64606 -12.51949 -12.23693 -11.81639 -11.52117 -11.42432 -11.03378 -10.22308 -9.58347 -9.54498 -8.90533 -8.65795 -6.52303 -0.10717 0.76313 0.78003 0.80252 1.07584 1.25253 1.40436 1.47748 2.00019 2.13403 2.69565 3.55229 3.99946 4.11711 4.31339 4.43701 4.55817 4.66478 4.75749 4.88837 5.00666 5.10444 5.27910 5.40801 5.49166 5.62957 5.80692 5.89150 6.03180 6.24220 6.39037 6.72464 6.81996 8.18595 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.044944 B = 0.006818 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.847290 B = 4105.971518 C = 4525.257799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.048 3.952 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.490 4.490 8 H 0.053 0.947 9 C 0.072 3.928 10 C -0.248 4.248 11 C -0.083 4.083 12 C -0.211 4.211 13 C -0.009 4.009 14 C -0.070 4.070 15 C -0.137 4.137 16 C -0.204 4.204 17 S 0.119 5.881 18 C -0.230 4.230 19 C -0.208 4.208 20 H 0.293 0.707 21 H 0.098 0.902 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.157 0.843 25 H 0.198 0.802 26 H 0.157 0.843 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.380 -3.969 0.705 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.070 3.930 10 C -0.268 4.268 11 C -0.101 4.101 12 C -0.230 4.230 13 C -0.011 4.011 14 C -0.082 4.082 15 C -0.167 4.167 16 C -0.339 4.339 17 S 0.382 5.618 18 C -0.365 4.365 19 C -0.228 4.228 20 H 0.104 0.896 21 H 0.116 0.884 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.174 0.826 25 H 0.215 0.785 26 H 0.175 0.825 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.319 -5.161 1.723 16.256 hybrid contribution -0.975 1.686 -0.809 2.109 sum 14.344 -3.475 0.915 14.787 Atomic orbital electron populations 1.69733 1.09163 1.31402 1.37610 1.26803 0.95322 1.04175 0.90311 0.85479 0.79508 0.76488 0.79583 1.18029 1.20419 1.17869 1.19442 0.94570 0.95619 1.42313 0.92837 1.17796 0.92559 0.92211 0.90473 1.21241 0.97135 1.04534 1.03880 1.20973 0.92667 0.97948 0.98464 1.20945 0.99946 0.99074 1.03053 1.18458 0.91909 0.94495 0.96228 1.18212 0.94534 0.96801 0.98628 1.20313 0.92292 1.00954 1.03137 1.25837 1.04836 1.00584 1.02609 1.83832 0.99259 1.34308 1.44361 1.25910 1.03642 1.01860 1.05124 1.21211 0.93104 1.03863 1.04653 0.89628 0.88417 0.84869 0.84693 0.82550 0.78464 0.82521 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.75 13.93 21.82 0.30 -47.45 15 2 C 0.05 2.63 5.40 85.25 0.46 3.09 15 3 Si 0.97 43.56 24.52 68.60 1.68 45.24 15 4 H -0.26 -10.75 6.71 99.48 0.67 -10.09 15 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 6 H -0.25 -11.79 6.86 99.48 0.68 -11.11 15 7 C -0.49 -28.27 9.57 23.46 0.22 -28.04 15 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 15 9 C 0.07 3.77 5.10 -21.32 -0.11 3.67 15 10 C -0.25 -11.87 7.17 22.77 0.16 -11.71 15 11 C -0.08 -3.33 10.01 22.19 0.22 -3.11 15 12 C -0.21 -8.04 9.50 22.67 0.22 -7.82 15 13 C -0.01 -0.35 5.87 -20.09 -0.12 -0.47 15 14 C -0.07 -2.39 5.79 -21.14 -0.12 -2.52 15 15 C -0.14 -3.71 9.53 21.38 0.20 -3.51 15 16 C -0.20 -4.42 11.19 66.66 0.75 -3.68 15 17 S 0.12 2.80 23.32 -56.49 -1.32 1.48 15 18 C -0.23 -7.36 10.51 66.98 0.70 -6.65 15 19 C -0.21 -9.99 9.22 22.95 0.21 -9.78 15 20 H 0.29 14.72 8.30 -92.71 -0.77 13.95 15 21 H 0.10 4.64 4.72 -2.91 -0.01 4.63 15 22 H 0.13 4.35 8.06 -2.91 -0.02 4.32 15 23 H 0.14 4.10 6.52 -2.91 -0.02 4.08 15 24 H 0.16 3.62 6.69 -2.91 -0.02 3.60 15 25 H 0.20 2.75 8.06 -2.91 -0.02 2.72 15 26 H 0.16 5.14 6.80 -2.91 -0.02 5.12 15 27 H 0.10 4.62 6.60 -2.91 -0.02 4.60 15 Total: -1.00 -61.74 245.10 4.60 -57.14 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.13 Total: 14.11 kcal Atomic # 6 Polarization: -73.33 SS G_CDS: 2.80 Total: -70.53 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.30 Total: -47.45 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.24 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -61.74 4.60 -57.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239510584.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.268 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds