Wall clock time and date at job start Sun Mar 29 2020 21:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99822 * 2 1 4 4 H 1.48508 * 109.46828 * 270.00190 * 3 2 1 5 5 H 1.48497 * 109.47030 * 29.99646 * 3 2 1 6 6 H 1.48497 * 109.47104 * 150.00129 * 3 2 1 7 7 C 1.38630 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.35684 * 117.00079 * 185.06636 * 9 7 2 11 11 C 1.38731 * 120.13427 * 354.39604 * 10 9 7 12 12 C 1.38135 * 120.05052 * 180.28574 * 11 10 9 13 13 C 1.38428 * 120.31681 * 359.71497 * 12 11 10 14 14 C 1.38040 * 120.26479 * 0.02562 * 13 12 11 15 15 C 1.39256 * 119.94678 * 359.97438 * 14 13 12 16 16 C 1.48352 * 120.16051 * 180.02562 * 15 14 13 17 17 C 1.46717 * 127.11540 * 310.00658 * 16 15 14 18 18 C 1.34362 * 106.03534 * 179.97438 * 17 16 15 19 19 O 1.34162 * 108.99940 * 0.02562 * 18 17 16 20 20 C 1.34118 * 110.74813 * 0.02562 * 19 18 17 21 21 H 0.97003 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.97890 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.84411 * 179.75095 * 12 11 10 24 24 H 1.07994 * 119.87210 * 180.02562 * 13 12 11 25 25 H 1.07998 * 120.02746 * 180.02562 * 14 13 12 26 26 H 1.08004 * 126.98073 * 359.71279 * 17 16 15 27 27 H 1.07997 * 125.50784 * 179.97438 * 18 17 16 28 28 H 1.08000 * 125.77264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0698 -3.5036 0.1078 11 6 3.4556 -3.4402 0.0943 12 6 4.2021 -4.5979 0.1977 13 6 3.5742 -5.8255 0.3212 14 6 2.1962 -5.9032 0.3414 15 6 1.4329 -4.7430 0.2380 16 6 -0.0484 -4.8210 0.2598 17 6 -0.9007 -5.7005 -0.5481 18 6 -2.1656 -5.4227 -0.1902 19 8 -2.1533 -4.4655 0.7498 20 6 -0.8963 -4.0922 1.0314 21 1 -0.4850 0.8400 -0.0004 22 1 3.9512 -2.4854 -0.0013 23 1 5.2807 -4.5451 0.1828 24 1 4.1649 -6.7260 0.4019 25 1 1.7104 -6.8628 0.4383 26 1 -0.5772 -6.4214 -1.2844 27 1 -3.0496 -5.8933 -0.5944 28 1 -0.6072 -3.3400 1.7504 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239690118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:20 Heat of formation + Delta-G solvation = 11.682594 kcal Electronic energy + Delta-G solvation = -15184.593161 eV Core-core repulsion = 12554.143139 eV Total energy + Delta-G solvation = -2630.450021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62042 -38.93351 -36.34380 -32.83541 -32.24997 -30.00173 -29.09802 -27.88286 -25.36730 -22.50962 -21.56625 -20.55021 -19.67098 -17.94904 -17.44912 -16.35010 -15.25291 -14.81074 -14.49131 -14.43674 -13.94481 -13.57826 -13.42944 -12.64519 -12.26129 -12.22785 -11.89098 -11.68073 -11.25266 -10.88337 -10.73454 -10.71039 -10.45412 -9.39081 -9.17025 -8.84929 -8.29622 -7.72186 -7.08750 -6.46172 -4.04854 1.97061 2.37701 2.53218 3.12036 3.12849 3.17460 3.29717 3.75642 3.95244 4.57401 5.07768 5.22006 5.30019 5.56289 5.65542 5.79697 5.86855 6.03120 6.13888 6.29925 6.50979 6.70829 6.81348 6.86078 7.00585 7.09033 7.32531 7.37369 7.40513 7.79772 7.84279 7.98363 8.99014 9.69089 10.70917 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.010274 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.672216 B = 2724.693526 C = 3936.357552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.091 0.909 9 O -0.168 6.168 10 C 0.160 3.840 11 C -0.233 4.233 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.062 4.062 15 C -0.097 4.097 16 C -0.126 4.126 17 C -0.206 4.206 18 C -0.056 4.056 19 O -0.187 6.187 20 C 0.000 4.000 21 H 0.270 0.730 22 H 0.128 0.872 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.194 0.806 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -7.688 0.678 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.070 6.070 10 C 0.106 3.894 11 C -0.253 4.253 12 C -0.092 4.092 13 C -0.233 4.233 14 C -0.081 4.081 15 C -0.099 4.099 16 C -0.127 4.127 17 C -0.226 4.226 18 C -0.123 4.123 19 O -0.084 6.084 20 C -0.067 4.067 21 H 0.080 0.920 22 H 0.146 0.854 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.161 0.839 27 H 0.211 0.789 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.366 -7.335 0.789 7.387 hybrid contribution 0.790 0.777 -0.288 1.146 sum 1.156 -6.558 0.501 6.678 Atomic orbital electron populations 1.70049 1.05846 1.27656 1.45726 1.25259 0.95829 0.98725 0.96522 0.85735 0.78946 0.80186 0.78712 1.19925 1.20259 1.19213 1.21336 0.91838 0.80891 1.53021 0.89131 1.83979 1.34014 1.11170 1.77873 1.19361 0.90049 0.87569 0.92465 1.21105 0.93502 0.99095 1.11566 1.20799 0.98478 0.92388 0.97537 1.20527 0.94158 0.96972 1.11664 1.20680 0.93289 0.96098 0.97990 1.17170 0.89607 0.90977 1.12137 1.19949 0.92798 1.00085 0.99901 1.22784 0.92445 1.03755 1.03572 1.23635 0.98971 0.94584 0.95115 1.83833 1.30675 1.45841 1.48028 1.24178 0.79563 1.00501 1.02424 0.92022 0.85419 0.87491 0.87538 0.87007 0.83948 0.78917 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.67 55.48 0.76 -23.95 15 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 15 3 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 7 C -0.39 -10.85 9.49 30.88 0.29 -10.56 15 8 H 0.09 2.32 5.21 -52.48 -0.27 2.04 15 9 O -0.17 -4.67 8.69 0.31 0.00 -4.67 15 10 C 0.16 3.89 6.63 -38.76 -0.26 3.63 15 11 C -0.23 -5.11 9.16 -39.44 -0.36 -5.47 15 12 C -0.07 -1.37 10.03 -39.55 -0.40 -1.77 15 13 C -0.21 -3.79 10.03 -39.58 -0.40 -4.18 15 14 C -0.06 -1.17 9.76 -39.28 -0.38 -1.55 15 15 C -0.10 -2.14 5.82 -104.71 -0.61 -2.74 15 16 C -0.13 -2.67 5.53 -103.17 -0.57 -3.24 15 17 C -0.21 -3.69 11.13 -37.53 -0.42 -4.11 15 18 C -0.06 -0.93 12.04 29.36 0.35 -0.57 15 19 O -0.19 -3.62 10.55 6.58 0.07 -3.56 15 20 C 0.00 0.01 11.39 29.88 0.34 0.35 15 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.13 2.77 5.64 -52.49 -0.30 2.47 15 23 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.14 2.19 8.06 -52.48 -0.42 1.77 15 27 H 0.19 2.22 8.06 -52.49 -0.42 1.80 15 28 H 0.20 4.29 8.06 -52.49 -0.42 3.87 15 LS Contribution 257.80 15.07 3.88 3.88 Total: -1.00 -30.65 257.80 -5.05 -35.70 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -2.24 Total: 6.48 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -2.50 Total: -29.20 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.95 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.65 -5.05 -35.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239690118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.379 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds