Wall clock time and date at job start Sun Mar 29 2020 21:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99822 * 2 1 4 4 H 1.48508 * 109.46828 * 270.00190 * 3 2 1 5 5 H 1.48497 * 109.47030 * 29.99646 * 3 2 1 6 6 H 1.48497 * 109.47104 * 150.00129 * 3 2 1 7 7 C 1.38630 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.35684 * 117.00079 * 185.06636 * 9 7 2 11 11 C 1.38731 * 120.13427 * 354.39604 * 10 9 7 12 12 C 1.38135 * 120.05052 * 180.28574 * 11 10 9 13 13 C 1.38428 * 120.31681 * 359.71497 * 12 11 10 14 14 C 1.38040 * 120.26479 * 0.02562 * 13 12 11 15 15 C 1.39256 * 119.94678 * 359.97438 * 14 13 12 16 16 C 1.48352 * 120.16051 * 180.02562 * 15 14 13 17 17 C 1.46717 * 127.11540 * 310.00658 * 16 15 14 18 18 C 1.34362 * 106.03534 * 179.97438 * 17 16 15 19 19 O 1.34162 * 108.99940 * 0.02562 * 18 17 16 20 20 C 1.34118 * 110.74813 * 0.02562 * 19 18 17 21 21 H 0.97003 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.97890 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.84411 * 179.75095 * 12 11 10 24 24 H 1.07994 * 119.87210 * 180.02562 * 13 12 11 25 25 H 1.07998 * 120.02746 * 180.02562 * 14 13 12 26 26 H 1.08004 * 126.98073 * 359.71279 * 17 16 15 27 27 H 1.07997 * 125.50784 * 179.97438 * 18 17 16 28 28 H 1.08000 * 125.77264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0698 -3.5036 0.1078 11 6 3.4556 -3.4402 0.0943 12 6 4.2021 -4.5979 0.1977 13 6 3.5742 -5.8255 0.3212 14 6 2.1962 -5.9032 0.3414 15 6 1.4329 -4.7430 0.2380 16 6 -0.0484 -4.8210 0.2598 17 6 -0.9007 -5.7005 -0.5481 18 6 -2.1656 -5.4227 -0.1902 19 8 -2.1533 -4.4655 0.7498 20 6 -0.8963 -4.0922 1.0314 21 1 -0.4850 0.8400 -0.0004 22 1 3.9512 -2.4854 -0.0013 23 1 5.2807 -4.5451 0.1828 24 1 4.1649 -6.7260 0.4019 25 1 1.7104 -6.8628 0.4383 26 1 -0.5772 -6.4214 -1.2844 27 1 -3.0496 -5.8933 -0.5944 28 1 -0.6072 -3.3400 1.7504 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239690118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:20 Heat of formation + Delta-G solvation = -6.931859 kcal Electronic energy + Delta-G solvation = -15185.400344 eV Core-core repulsion = 12554.143139 eV Total energy + Delta-G solvation = -2631.257205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10797 -40.65794 -38.07025 -34.44208 -34.14917 -31.48311 -30.71551 -29.46505 -27.33541 -24.08932 -23.23144 -22.01131 -21.22601 -19.78618 -19.06740 -18.03445 -16.78144 -16.47011 -16.15384 -16.10222 -15.53921 -15.33139 -15.01444 -14.40121 -13.78325 -13.66230 -13.55211 -13.41397 -12.89319 -12.50330 -12.38047 -12.26203 -12.12189 -11.20494 -10.80991 -10.67350 -9.77090 -9.31030 -8.79406 -8.44899 -6.12008 0.37024 0.75158 1.09652 1.34924 1.43775 1.51659 1.77087 2.17537 2.32573 2.85895 3.19243 3.50943 3.88109 4.08706 4.20563 4.28895 4.40526 4.58988 4.69557 4.73263 5.01244 5.10409 5.17151 5.28516 5.33084 5.57160 5.70755 5.75686 5.79447 6.03362 6.23768 6.35131 6.99329 7.80956 8.76786 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.010274 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.672216 B = 2724.693526 C = 3936.357552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.015 2.985 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.214 6.214 10 C 0.118 3.882 11 C -0.248 4.248 12 C -0.072 4.072 13 C -0.190 4.190 14 C -0.062 4.062 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.221 4.221 18 C -0.037 4.037 19 O -0.198 6.198 20 C -0.030 4.030 21 H 0.271 0.729 22 H 0.120 0.880 23 H 0.146 0.854 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.170 0.830 27 H 0.248 0.752 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -9.908 0.182 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.119 6.119 10 C 0.067 3.933 11 C -0.267 4.267 12 C -0.089 4.089 13 C -0.208 4.208 14 C -0.080 4.080 15 C -0.114 4.114 16 C -0.146 4.146 17 C -0.240 4.240 18 C -0.103 4.103 19 O -0.095 6.095 20 C -0.097 4.097 21 H 0.080 0.920 22 H 0.138 0.862 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.161 0.839 26 H 0.188 0.812 27 H 0.263 0.737 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.855 -9.608 0.298 9.790 hybrid contribution 0.411 1.124 -0.133 1.204 sum 2.266 -8.484 0.166 8.783 Atomic orbital electron populations 1.70201 1.07811 1.28572 1.48526 1.26478 0.96781 1.02423 0.95931 0.84638 0.77870 0.74940 0.79097 1.19064 1.19697 1.17749 1.21807 0.92484 0.81663 1.53255 0.88364 1.83960 1.35239 1.12014 1.80734 1.19955 0.91399 0.87665 0.94251 1.21268 0.92885 1.00388 1.12174 1.21240 1.00339 0.91452 0.95917 1.21119 0.93976 0.98222 1.07530 1.21113 0.94001 0.96178 0.96697 1.17608 0.90536 0.91250 1.11967 1.20301 0.93014 1.00841 1.00419 1.23097 0.92330 1.04298 1.04227 1.24695 1.00530 0.92319 0.92716 1.83822 1.29724 1.46838 1.49087 1.23937 0.80699 1.01377 1.03714 0.92010 0.86243 0.83636 0.82901 0.83881 0.81209 0.73650 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.69 13.67 21.61 0.30 -55.39 15 2 C -0.02 -1.02 5.49 84.82 0.47 -0.55 15 3 Si 1.01 42.95 29.55 68.60 2.03 44.98 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.42 -24.11 9.49 67.91 0.64 -23.47 15 8 H 0.10 5.26 5.21 -2.91 -0.02 5.25 15 9 O -0.21 -12.69 8.69 -21.81 -0.19 -12.88 15 10 C 0.12 5.96 6.63 22.80 0.15 6.11 15 11 C -0.25 -10.88 9.16 22.36 0.20 -10.67 15 12 C -0.07 -2.44 10.03 22.29 0.22 -2.21 15 13 C -0.19 -5.86 10.03 22.27 0.22 -5.64 15 14 C -0.06 -2.15 9.76 22.47 0.22 -1.93 15 15 C -0.11 -4.94 5.82 -19.92 -0.12 -5.05 15 16 C -0.14 -6.22 5.53 -18.92 -0.10 -6.32 15 17 C -0.22 -7.54 11.13 23.60 0.26 -7.27 15 18 C -0.04 -1.13 12.04 66.93 0.81 -0.33 15 19 O -0.20 -7.75 10.55 0.65 0.01 -7.75 15 20 C -0.03 -1.35 11.39 67.27 0.77 -0.58 15 21 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 22 H 0.12 5.31 5.64 -2.91 -0.02 5.29 15 23 H 0.15 3.83 8.06 -2.91 -0.02 3.80 15 24 H 0.15 3.41 8.06 -2.91 -0.02 3.38 15 25 H 0.14 4.05 8.06 -2.91 -0.02 4.03 15 26 H 0.17 4.71 8.06 -2.91 -0.02 4.68 15 27 H 0.25 4.59 8.06 -2.91 -0.02 4.56 15 28 H 0.18 8.61 8.06 -2.91 -0.02 8.58 15 Total: -1.00 -71.73 257.80 7.07 -64.67 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.18 Total: 24.28 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 3.75 Total: -57.92 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.30 Total: -55.39 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.18 Total: -20.62 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.73 7.07 -64.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239690118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.736 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds