Wall clock time and date at job start Sun Mar 29 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34544 * 125.78242 * 2 1 4 4 C 1.38070 * 107.37646 * 179.97438 * 3 2 1 5 5 C 1.47683 * 126.40460 * 179.97438 * 4 3 2 6 6 N 1.32912 * 120.25591 * 325.00774 * 5 4 3 7 7 C 1.32042 * 120.06806 * 179.97438 * 6 5 4 8 8 C 1.39148 * 120.60195 * 359.97438 * 7 6 5 9 9 N 1.31635 * 120.52103 * 0.28269 * 8 7 6 10 10 C 1.33964 * 119.90505 * 359.44664 * 9 8 7 11 11 C 1.40738 * 120.29089 * 180.27424 * 10 9 8 12 12 H 1.07999 * 120.00049 * 180.27329 * 11 10 9 13 13 C 1.40141 * 119.99631 * 0.27433 * 11 10 9 14 14 N 1.30710 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99736 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47347 * 119.99721 * 15 13 11 18 18 H 1.48498 * 109.47264 * 239.99757 * 15 13 11 19 19 C 1.41224 * 107.20098 * 0.23446 * 4 3 2 20 20 N 1.30499 * 108.08046 * 359.60974 * 19 4 3 21 21 H 1.09001 * 109.47317 * 89.98874 * 1 2 3 22 22 H 1.08997 * 109.47234 * 209.99255 * 1 2 3 23 23 H 1.09002 * 109.46973 * 329.99322 * 1 2 3 24 24 H 1.08005 * 126.31469 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.69640 * 179.97438 * 7 6 5 26 26 H 1.08002 * 119.73524 * 179.97438 * 8 7 6 27 27 H 0.96994 * 119.99660 * 180.02562 * 14 13 11 28 28 H 1.07995 * 125.96451 * 179.77343 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2517 1.0915 0.0000 4 6 3.5617 0.6555 0.0006 5 6 4.7687 1.5066 0.0003 6 7 4.7741 2.6607 -0.6589 7 6 5.8551 3.4190 -0.6563 8 6 6.9968 3.0225 0.0333 9 7 7.0189 1.8817 0.6897 10 6 5.9319 1.0990 0.7054 11 6 5.9447 -0.1196 1.4094 12 1 5.0671 -0.7491 1.4152 13 6 7.0961 -0.5160 2.1029 14 7 8.1584 0.2456 2.0954 15 14 7.1134 -2.1338 3.0367 16 1 5.7969 -2.8048 2.8888 17 1 8.1803 -3.0099 2.4896 18 1 7.3765 -1.8725 4.4747 19 6 3.5320 -0.7564 -0.0046 20 7 2.2833 -1.1352 0.0004 21 1 -0.3634 0.0002 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3633 0.8899 0.5140 24 1 1.9196 2.1192 0.0004 25 1 5.8530 4.3555 -1.1943 26 1 7.8734 3.6534 0.0257 27 1 8.9554 -0.0290 2.5751 28 1 4.3926 -1.4089 -0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240292418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:44 Heat of formation + Delta-G solvation = 123.296498 kcal Electronic energy + Delta-G solvation = -15222.584725 eV Core-core repulsion = 12661.560148 eV Total energy + Delta-G solvation = -2561.024577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39948 -38.64044 -34.11034 -33.09098 -31.97173 -30.69612 -28.74581 -26.24690 -26.01483 -22.67966 -21.87228 -20.23083 -19.69204 -17.57816 -16.54740 -15.90342 -14.97407 -14.86400 -14.53058 -14.01534 -13.75326 -13.00994 -12.76284 -12.48938 -12.24623 -11.94586 -11.63468 -11.41215 -11.36695 -10.58738 -10.27038 -10.01067 -9.83911 -9.49205 -9.16462 -8.75135 -8.31135 -7.44503 -7.13098 -6.51202 -4.63932 2.24815 2.63480 2.90037 3.03347 3.06350 3.08770 3.17465 3.80724 3.84050 4.65286 4.92430 5.33174 5.48627 5.54487 5.63219 5.77165 5.88126 6.06497 6.31922 6.36708 6.54214 6.71825 6.93503 7.04975 7.21390 7.35260 7.61496 7.72254 8.05731 8.36507 8.42043 8.68837 9.28346 9.87206 10.10469 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.011287 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.707920 B = 2480.139676 C = 3740.824338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.386 5.386 3 C 0.048 3.952 4 C -0.126 4.126 5 C 0.021 3.979 6 N -0.424 5.424 7 C -0.120 4.120 8 C 0.080 3.920 9 N -0.455 5.455 10 C 0.219 3.781 11 C -0.409 4.409 12 H 0.103 0.897 13 C 0.065 3.935 14 N -0.705 5.705 15 Si 0.906 3.094 16 H -0.255 1.255 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.068 3.932 20 N -0.319 5.319 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.277 0.723 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -0.925 -0.561 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.169 5.169 3 C -0.098 4.098 4 C -0.138 4.138 5 C -0.128 4.128 6 N -0.137 5.137 7 C -0.280 4.280 8 C -0.090 4.090 9 N -0.172 5.172 10 C 0.093 3.907 11 C -0.440 4.440 12 H 0.121 0.879 13 C -0.162 4.162 14 N -0.325 5.325 15 Si 0.729 3.271 16 H -0.178 1.178 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.118 4.118 20 N -0.140 5.140 21 H 0.085 0.915 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.186 0.814 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.088 0.912 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.121 -1.882 -0.473 8.350 hybrid contribution 0.721 0.334 0.401 0.891 sum -7.400 -1.548 -0.072 7.561 Atomic orbital electron populations 1.21668 0.75336 1.03727 1.02560 1.48030 1.05963 1.04148 1.58754 1.22750 0.90771 0.92490 1.03812 1.18655 0.90834 0.91986 1.12360 1.19447 0.93813 0.94337 1.05161 1.67686 1.27628 1.03809 1.14564 1.22489 0.92612 1.02183 1.10729 1.23473 0.96985 0.94862 0.93655 1.69560 1.26130 1.03094 1.18394 1.19230 0.87135 0.93452 0.90850 1.19997 0.98972 1.02127 1.22881 0.87930 1.26225 0.95115 0.98762 0.96107 1.70104 1.01504 1.33612 1.27289 0.86259 0.80052 0.81244 0.79496 1.17776 1.19494 1.19613 1.24228 0.94305 0.95057 0.98213 1.76997 1.02188 1.08194 1.26656 0.91517 0.89899 0.90137 0.81379 0.85746 0.85478 0.91204 0.79122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.24 11.45 59.85 0.69 1.93 15 2 N -0.39 -6.73 3.99 -67.52 -0.27 -7.00 15 3 C 0.05 0.92 11.46 -16.42 -0.19 0.74 15 4 C -0.13 -2.83 5.64 -104.97 -0.59 -3.42 15 5 C 0.02 0.54 6.73 -82.10 -0.55 -0.01 15 6 N -0.42 -10.50 10.39 -8.98 -0.09 -10.59 15 7 C -0.12 -2.79 11.22 -17.12 -0.19 -2.98 15 8 C 0.08 1.92 11.21 -17.30 -0.19 1.73 15 9 N -0.46 -12.38 8.03 -10.73 -0.09 -12.47 15 10 C 0.22 5.90 6.57 -84.55 -0.56 5.34 15 11 C -0.41 -10.44 8.18 -37.92 -0.31 -10.75 15 12 H 0.10 2.46 4.30 -52.49 -0.23 2.23 15 13 C 0.07 1.59 5.50 -17.31 -0.10 1.49 15 14 N -0.70 -18.02 11.48 55.56 0.64 -17.39 15 15 Si 0.91 17.86 29.56 -169.99 -5.02 12.83 15 16 H -0.25 -4.94 7.11 56.52 0.40 -4.54 15 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 18 H -0.27 -5.30 7.11 56.52 0.40 -4.89 15 19 C 0.07 1.45 9.81 -16.98 -0.17 1.28 15 20 N -0.32 -6.36 12.50 30.85 0.39 -5.97 15 21 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.17 2.83 8.06 -52.48 -0.42 2.41 15 25 H 0.13 2.47 8.06 -52.49 -0.42 2.05 15 26 H 0.13 2.61 8.06 -52.49 -0.42 2.19 15 27 H 0.28 6.35 8.29 -40.82 -0.34 6.01 15 28 H 0.19 3.89 6.56 -52.49 -0.34 3.55 15 LS Contribution 252.81 15.07 3.81 3.81 Total: -1.00 -31.23 252.81 -5.04 -36.27 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.24 Total: 5.16 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.16 Total: -4.66 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.57 Total: -53.42 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.23 -5.04 -36.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240292418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.571 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds