Wall clock time and date at job start Sun Mar 29 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34669 * 125.86527 * 2 1 4 4 C 1.36596 * 107.60474 * 179.76769 * 3 2 1 5 5 C 1.48247 * 126.25643 * 180.24662 * 4 3 2 6 6 C 1.40124 * 119.99167 * 5.00001 * 5 4 3 7 7 N 1.32135 * 120.29248 * 179.97438 * 6 5 4 8 8 C 1.31912 * 120.29322 * 0.02562 * 7 6 5 9 9 C 1.40782 * 119.97673 * 359.97438 * 8 7 6 10 10 C 1.41299 * 120.14109 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00713 * 351.37370 * 10 9 8 12 12 C 1.40041 * 120.00091 * 171.37242 * 10 9 8 13 13 N 1.30735 * 120.00334 * 169.29787 * 12 10 9 14 14 Si 1.86807 * 119.99897 * 349.29870 * 12 10 9 15 15 H 1.48493 * 109.47109 * 84.66964 * 14 12 10 16 16 H 1.48498 * 109.47174 * 204.67575 * 14 12 10 17 17 H 1.48504 * 109.46707 * 324.67008 * 14 12 10 18 18 N 1.32526 * 119.99639 * 184.72864 * 5 4 3 19 19 C 1.40955 * 107.49459 * 0.22720 * 4 3 2 20 20 N 1.30618 * 108.06372 * 359.97438 * 19 4 3 21 21 H 1.09001 * 109.46817 * 90.00602 * 1 2 3 22 22 H 1.08997 * 109.47057 * 210.00406 * 1 2 3 23 23 H 1.08994 * 109.47341 * 330.00551 * 1 2 3 24 24 H 1.08004 * 126.19817 * 0.03332 * 3 2 1 25 25 H 1.07995 * 119.85172 * 0.02562 * 6 5 4 26 26 H 1.08002 * 120.00814 * 180.02562 * 8 7 6 27 27 H 0.97008 * 120.00105 * 179.97438 * 13 12 10 28 28 H 1.08010 * 125.96774 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2540 1.0914 0.0000 4 6 3.5512 0.6634 0.0053 5 6 4.7583 1.5239 0.0123 6 6 4.6264 2.9147 0.1199 7 7 5.6983 3.6873 0.1273 8 6 6.9020 3.1561 0.0330 9 6 7.0483 1.7601 -0.0756 10 6 8.3361 1.1873 -0.1762 11 1 9.2002 1.8212 -0.3102 12 6 8.4921 -0.2024 -0.1022 13 7 9.6417 -0.7481 -0.4017 14 14 7.0574 -1.2765 0.4246 15 1 6.2014 -1.5712 -0.7525 16 1 7.5733 -2.5480 0.9923 17 1 6.2571 -0.5641 1.4528 18 7 5.9622 0.9772 -0.0776 19 6 3.5323 -0.7461 0.0032 20 7 2.2852 -1.1345 -0.0024 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.9214 2.1189 0.0005 25 1 3.6443 3.3571 0.1979 26 1 7.7751 3.7919 0.0399 27 1 9.7499 -1.7107 -0.3500 28 1 4.3980 -1.3921 0.0059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240294098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:46 Heat of formation + Delta-G solvation = 86.062296 kcal Electronic energy + Delta-G solvation = -15163.817058 eV Core-core repulsion = 12601.177885 eV Total energy + Delta-G solvation = -2562.639173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.28723 -40.88661 -36.02218 -34.97590 -34.00591 -33.13992 -30.64355 -28.01459 -27.61259 -24.96651 -23.89971 -21.86860 -21.48297 -19.62764 -18.57636 -17.43161 -17.18047 -16.86640 -16.46209 -15.87699 -15.26243 -15.17492 -14.65559 -14.01327 -13.80341 -13.56541 -13.44246 -13.18081 -13.09818 -12.85795 -12.52539 -11.89829 -11.73517 -11.43081 -11.04538 -10.54546 -10.40443 -9.39564 -9.00612 -8.98219 -6.81962 0.15016 0.68254 0.90685 1.39268 1.49285 1.54839 1.63863 1.85842 2.35191 2.62664 3.31611 3.62304 3.82692 3.93930 4.06972 4.16834 4.24469 4.47873 4.50748 4.68171 4.72150 4.74302 4.94670 5.12241 5.18098 5.39744 5.67678 5.94608 6.03131 6.37053 6.42840 6.55266 7.09293 7.54884 7.94368 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.009934 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.428534 B = 2818.050841 C = 3734.683989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.366 5.366 3 C 0.112 3.888 4 C -0.225 4.225 5 C 0.202 3.798 6 C -0.096 4.096 7 N -0.423 5.423 8 C -0.068 4.068 9 C 0.192 3.808 10 C -0.424 4.424 11 H 0.089 0.911 12 C 0.056 3.944 13 N -0.814 5.814 14 Si 1.037 2.963 15 H -0.275 1.275 16 H -0.318 1.318 17 H -0.275 1.275 18 N -0.561 5.561 19 C 0.055 3.945 20 N -0.325 5.325 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.126 0.874 24 H 0.230 0.770 25 H 0.179 0.821 26 H 0.153 0.847 27 H 0.301 0.699 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 1.207 1.175 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.146 5.146 3 C -0.038 4.038 4 C -0.238 4.238 5 C 0.057 3.943 6 C -0.254 4.254 7 N -0.135 5.135 8 C -0.236 4.236 9 C 0.067 3.933 10 C -0.457 4.457 11 H 0.107 0.893 12 C -0.165 4.165 13 N -0.438 5.438 14 Si 0.871 3.129 15 H -0.202 1.202 16 H -0.250 1.250 17 H -0.203 1.203 18 N -0.285 5.285 19 C -0.131 4.131 20 N -0.146 5.146 21 H 0.111 0.889 22 H 0.112 0.888 23 H 0.144 0.856 24 H 0.247 0.753 25 H 0.196 0.804 26 H 0.171 0.829 27 H 0.112 0.888 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.883 0.073 1.115 17.918 hybrid contribution 0.966 -0.012 0.024 0.966 sum -16.917 0.061 1.139 16.956 Atomic orbital electron populations 1.22389 0.70520 1.06689 1.05276 1.48855 1.08499 1.02812 1.54415 1.23064 0.88567 0.95199 0.97013 1.18789 0.92356 0.92386 1.20319 1.20083 0.90116 0.92390 0.91676 1.23087 0.98295 0.89487 1.14580 1.67747 0.99247 1.39832 1.06629 1.23202 0.95327 0.93136 1.11903 1.19463 0.92074 0.91642 0.90168 1.19550 0.92316 0.93017 1.40784 0.89256 1.26870 0.99275 1.00087 0.90310 1.69601 1.26461 1.15263 1.32505 0.84113 0.76181 0.72896 0.79702 1.20207 1.24994 1.20274 1.67370 0.98982 1.37764 1.24412 1.24081 0.95002 0.95402 0.98632 1.77149 1.01458 1.09787 1.26239 0.88901 0.88792 0.85583 0.75350 0.80387 0.82935 0.88845 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.45 127.77 1.46 2.50 15 2 N -0.37 -9.02 4.00 -368.71 -1.47 -10.50 15 3 C 0.11 2.86 10.87 83.87 0.91 3.78 15 4 C -0.23 -8.41 6.07 -20.33 -0.12 -8.54 15 5 C 0.20 8.88 6.76 42.16 0.29 9.17 15 6 C -0.10 -3.84 10.76 85.11 0.92 -2.92 15 7 N -0.42 -18.89 10.47 -192.03 -2.01 -20.90 15 8 C -0.07 -3.25 10.97 85.30 0.94 -2.31 15 9 C 0.19 10.09 6.31 40.20 0.25 10.34 15 10 C -0.42 -23.37 9.70 23.46 0.23 -23.14 15 11 H 0.09 4.97 8.06 -2.91 -0.02 4.95 15 12 C 0.06 3.02 5.52 85.29 0.47 3.49 15 13 N -0.81 -43.67 13.92 21.84 0.30 -43.37 15 14 Si 1.04 50.43 23.22 68.60 1.59 52.02 15 15 H -0.27 -13.35 6.32 99.48 0.63 -12.72 15 16 H -0.32 -14.61 7.11 99.48 0.71 -13.91 15 17 H -0.28 -14.04 6.48 99.48 0.64 -13.40 15 18 N -0.56 -28.67 4.67 -177.65 -0.83 -29.50 15 19 C 0.05 2.17 11.67 85.54 1.00 3.17 15 20 N -0.32 -11.15 12.53 -56.41 -0.71 -11.85 15 21 H 0.09 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.13 0.56 8.14 -2.39 -0.02 0.54 15 24 H 0.23 3.37 7.30 -2.91 -0.02 3.34 15 25 H 0.18 5.25 7.02 -2.91 -0.02 5.23 15 26 H 0.15 6.72 8.06 -2.91 -0.02 6.70 15 27 H 0.30 14.60 8.29 -92.70 -0.77 13.83 15 28 H 0.16 6.95 4.62 -2.91 -0.01 6.94 15 Total: -1.00 -69.51 246.58 4.27 -65.25 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.05 Total: 3.32 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 6.34 Total: -4.46 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -4.72 Total: -116.12 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.59 Total: 52.02 kcal Total: -69.51 4.27 -65.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240294098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.310 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds